Open AroArz opened 5 years ago
Just saw there were other posts on here notifying of similar issues (https://github.com/ablab/spades/issues/152), I'm guessing they're the same but I'll let you be the judge of that.
Someone posted splitting the assembler and and spades-hammer (https://github.com/bhattlab/bhattlab_workflows/issues/24) as a potential work around. I'll give that a try.
If you feel there is nothing more to add to this issue please feel free to close otherwise I'll await your reply.
Did you do any sort of quality control/trimming before running metaspades? I was having this same issue with some of my samples WITH quality filtering using fastp, and after trying again WITHOUT quality filtering then all my samples finished assembly successfully
Hello, I've used SPAdes to assemble my metagenomic datasets however two of my samples are getting stuck in the exact same place repeatedly. I was able to assemble all my samples using megahit without any issues but much prefer SPAdes.
Appreciate any help you can provide