Error during hybrid assembly

ablab / spades

SPAdes Genome Assembler

http://ablab.github.io/spades/

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Error during hybrid assembly #98

Open koushikPCR opened 6 years ago

koushikPCR commented 6 years ago

I am assembling a Drosophila genome with Illumina paired end , Illumina mate pair reads along with nanopore long reads. Size of the genome is ~190 MB. Find the necessary files here params.txt spades.log Suggestions on inclusion of any specific parameters are welcome.

asl commented 6 years ago

It seems as you're running out of RAM. Are you sure you're willing to assemble Drosophila genome having just 11 Gb of RAM?