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abpatel2288 / cdhit

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cd-hit-2d segmentation fault (works fine with an older version) #11

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Download and uncompress 
http://genome.jgi-psf.org/Selmo1/download/Selmo1_GeneModels_FilteredModels3_aa.f
asta.gz
2. Download and uncompress 
ftp://ftp.ensemblgenomes.org/pub/release-17/plants//fasta/selaginella_moellendor
ffii/pep/Selaginella_moellendorffii.v1.0.17.pep.all.fa.gz
3.cd-hit-2d -i Selaginella_moellendorffii.v1.0.17.pep.all.fa -i2 
Selmo1_GeneModels_FilteredModels3_aa.fasta -c 0.99 -n 5 -o Models3unique.fa -M 
2000

What is the expected output? What do you see instead?

I see Segmentation fault: 11

What version of the product are you using? On what operating system?

cd-hit-v4.6.1-2012-08-27 on OSX 10.8.2 Build 12C60

Please provide any additional information below.

cd-hit-v4.5.4-2011-03-07 from Bioinformatics.org works fine.

Original issue reported on code.google.com by heath.ob...@gmail.com on 20 Feb 2013 at 6:42

GoogleCodeExporter commented 9 years ago 
I have a same problem into my OSX and ubuntu box. I found that 
"cd-hit-v4.5.7-2011-12-16.tgz" is the latest version that works on my platform.

Original comment by changjin...@gmail.com on 2 Mar 2013 at 6:45

GoogleCodeExporter commented 9 years ago 
Fixed in the code repository.

Original comment by daoko...@gmail.com on 21 Mar 2013 at 11:19