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abria / TeraStitcher

A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
http://abria.github.io/TeraStitcher/
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Error message appears after merging: the reference system is not supported #11

Closed pawlowska closed 5 years ago

pawlowska commented 7 years ago

After merging and saving is completed, the following error message appears:

in StackedVolume::init(...): the reference system {1,1,3} is not supported.

Using Windows 7 standalone GUI version.

terastitcher_error_endofmerging

abria commented 7 years ago

This error occurs when trying to import the generated (stitched) image and produce metadata files needed by other tools (TeraConverter and TeraFly for visualization).

Unless you are interested to these tools, you can ignore this error.

Of course, we will fix it in the next release. Thanks for letting us know!

iannellog commented 7 years ago

Monika, could you please send us the xml file generated by TeraStitcher?

-- Giulio

2016-12-06 11:42 GMT+01:00 Monika Pawlowska notifications@github.com:

After merging and saving is completed, the following error message appears:

in StackedVolume::init(...): the reference system {1,1,3} is not supported.

Using Windows 7 standalone GUI version.

[image: terastitcher_error_endofmerging] https://cloud.githubusercontent.com/assets/11158300/20922542/c3178dfa-bba8-11e6-82e0-597e8531885a.PNG

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/abria/TeraStitcher/issues/11, or mute the thread https://github.com/notifications/unsubscribe-auth/AIdv1nEtoVWZSu9u-6ZKW0TfrMmnTFD1ks5rFTv9gaJpZM4LFQus .

pawlowska commented 7 years ago

@iannellog sure, should I post them here or send them to your email listed in github? And which one?

iannellog commented 7 years ago

Send it to g.iannello@unicampus.it Thanks

-- Giulio

2016-12-06 12:28 GMT+01:00 Monika Pawlowska notifications@github.com:

@iannellog https://github.com/iannellog sure, should I post them here or send them to your email listed in github? And which one?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/abria/TeraStitcher/issues/11#issuecomment-265127004, or mute the thread https://github.com/notifications/unsubscribe-auth/AIdv1qbzQmx7qAnk2EhaxFK7-8SWCGABks5rFUbNgaJpZM4LFQus .

--

Giulio Iannello Preside della Facolta' Dipartimentale di Ingegneria Universita' Campus Bio-Medico di Roma v. Alvaro del Portillo, 21 00128 Roma, Italy

Tel: +39-06-22541-9602 E-mail: g.iannello@unicampus.it Fax: +39-06-22541-9609 URL: https://scholar.google.it/citations?user=L-UJxIgAAAAJ

pawlowska commented 7 years ago

@iannellog done.

iannellog commented 7 years ago

The bug you found has been already fixed. You have an old version of TeraStitcher (1.9.5). I am not sure that the binary version on GitHib (1.9.63) has been generated after the bug was fixed, but you can try. The latest sources (1.9.65) are however updated and, if you can, I suggest to rebuild them from scratch. Thanks for your help.

-- Giulio

2016-12-06 12:41 GMT+01:00 Monika Pawlowska notifications@github.com:

@iannellog https://github.com/iannellog done.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/abria/TeraStitcher/issues/11#issuecomment-265129663, or mute the thread https://github.com/notifications/unsubscribe-auth/AIdv1rZF7a7gRot0LnR8fnS1pwDyfol_ks5rFUoFgaJpZM4LFQus .

--

Giulio Iannello Preside della Facolta' Dipartimentale di Ingegneria Universita' Campus Bio-Medico di Roma v. Alvaro del Portillo, 21 00128 Roma, Italy

Tel: +39-06-22541-9602 E-mail: g.iannello@unicampus.it Fax: +39-06-22541-9609 URL: https://scholar.google.it/citations?user=L-UJxIgAAAAJ

pawlowska commented 7 years ago

@iannellog it seems that the error is gone in 1.9.63 version. My mistake - it appears that I had it downloaded, but not installed. Thanks for your help.

However, I have some other issues with the GUI of 1.9.63. When I try to select directory for saving merged files and I click on the '...' icon, the window for selecting directories is hiding under the main window, so that I have to drag it to the corner of the screen to do anything with it. Another point is that the window prompts me to select an empty directory, but then it doesn't let select directories, only files, so the only way to make it work is to paste a path in the field in the merge tab. (Also the fonts look awkward in Windows, but this is a minor point).