TeraStitcher can't see my TIF files even when using tiff2D or tiff3D I/O plugins

abria / TeraStitcher

A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

http://abria.github.io/TeraStitcher/

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TeraStitcher can't see my TIF files even when using tiff2D or tiff3D I/O plugins #23

Open Lalga opened 6 years ago

Lalga commented 6 years ago

As mentioned in the title, when I start the program and select the folder with my files in it, the program doesn't see anything within the folder itself. The folder appears empty however I know I have 20 Tif files in those folders.

What am I doing wrong and how can I resolve this?

Thanks for your help!

abria commented 6 years ago

TeraStitcher accepts two kinds of inputs:

two-level hierarchy of folders or
an xml file describing how your image files are organized

For more details, see Supported volume formats.

From what you mention, it is unclear how the folder you select is organised, and how folders and files are named.

Please provide a screenshot of the folder/file hierarchy so that we can help.

Thanks.

nemke333 commented 6 years ago

Dear Dr Bria,

I am having a similar problem as I am not quite sure how to organize the two-level hierarchy of folders. I have 6 z-stacks acquired by SPIM. I tried to stitch these using the pairwise stitching plugin in FIJI but eventually run out of RAM.

I will attach below a screenshot of the TIFF files from one specimen.

Your help is much appreciated.

Thank You. Stefan