installing terastitcher and getting 3D plugin to work

[danyalb]

I am trying to get the demo to run to completion. This is the error I receive in the merge step. Cannot find 3D I/O plugin “auto” or it is not a 3D I/O plugin

I would like sort guidance in installing on linux.

I ran the command cmake src build. Then make in the iomanager with the plugins.

Please help!

[danyalb]

The same error occurs when I run the binary files as well.

[iannellog]

I am sorry, but there is a mismatch between the command line reported on the website and the last versions.

You have to launch the command:

terastitcher --merge --projin=/xml_merging.xml --volout= --resolutions=01234 --imout_plugin="tiff3D"

or

terastitcher --merge --projin=/xml_merging.xml --volout= --resolutions=01234 --volout_plugin="TiledXY|3Dseries" --imout_format="tif"

i.e. you cannot use at the same time the options:

--volout_plugin="TiledXY|3Dseries"

and

--imout_plugin="tiff3D"

I hope this helps.

Best.

-- Giulio

2018-04-17 21:04 GMT+02:00 danyalb notifications@github.com:

The same error occurs when I run the binary files as well.

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Giulio Iannello Preside della Facolta' Dipartimentale di Ingegneria Universita' Campus Bio-Medico di Roma v. Alvaro del Portillo, 21 00128 Roma, Italy

Tel: +39-06-22541-9602 E-mail: g.iannello@unicampus.it Fax: +39-06-22541-9609 URL: https://scholar.google.it/citations?user=L-UJxIgAAAAJ

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[danyalb]

Thanks, that worked. Danyal

On Tue, Apr 17, 2018 at 4:51 PM, Giulio Iannello notifications@github.com wrote:

I am sorry, but there is a mismatch between the command line reported on the website and the last versions.

You have to launch the command:

terastitcher --merge --projin=/xml_merging.xml --volout= --resolutions=01234 --imout_plugin="tiff3D"

or

terastitcher --merge --projin=/xml_merging.xml --volout= --resolutions=01234 --volout_plugin="TiledXY|3Dseries" --imout_format="tif"

i.e. you cannot use at the same time the options:

--volout_plugin="TiledXY|3Dseries"

and

--imout_plugin="tiff3D"

I hope this helps.

Best.

-- Giulio

2018-04-17 21:04 GMT+02:00 danyalb notifications@github.com:

The same error occurs when I run the binary files as well.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <https://github.com/abria/TeraStitcher/issues/29#issuecomment-382106168 , or mute the thread https://github.com/notifications/unsubscribe-auth/ AIdv1pnRuY1HwWlUY1eOlfxRByBdho99ks5tpjy8gaJpZM4TYqmF .

--

---

Giulio Iannello Preside della Facolta' Dipartimentale di Ingegneria Universita' Campus Bio-Medico di Roma v. Alvaro del Portillo, 21 https://maps.google.com/?q=v.+Alvaro+del+Portillo,+21+%0D%0A00128+Roma,+Italy&entry=gmail&source=g 00128 Roma, Italy

Tel: +39-06-22541-9602 E-mail: g.iannello@unicampus.it Fax: +39-06-22541-9609 URL: https://scholar.google.it/citations?user=L-UJxIgAAAAJ

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