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abria / TeraStitcher

A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
http://abria.github.io/TeraStitcher/
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ERROR: in TeraStitcher v1.10.16 when imports a tiff3D #51

Open arafelyb8 opened 4 years ago

arafelyb8 commented 4 years ago

I can directly import a 3Dtiff files with its 2-level hierarchy of folders. However, it only recognizes one level of stacking (Z=1) and therefore there are only 1 slice (image attached).

Import

I have checked my RUI images with Fiji and they have more than 1700 slices.

There are no error message when importing. It seems that TeraStitcher recognizes the image as a 2Dtiff. In fact, the preview is a 2Dtiff without any signal (black).

I'm using the TeraStitcher v1.10.16.

Do you know the possible mistakes I could be doing?

iannellog commented 4 years ago

It seems that for some reason the multipage TIFF is not read correctly. I would need one of your files, but I understand that they are raeally big. If you cannot make available one TIFF with 1700 slices, could you generate with the same tool you use a file with a few slices and let me download it somehow? Best.

-- Giulio