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abria / TeraStitcher

A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
http://abria.github.io/TeraStitcher/
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terminate called after throwing an instance of 'IconImageManager::IOException' #79

Closed saskra closed 3 years ago

saskra commented 3 years ago

I am using this version: https://github.com/abria/TeraStitcher/wiki/Binary-packages#terastitcher-installer-gui-version

When I wanted to execute step 8 of the Command-line demo (https://github.com/abria/TeraStitcher/wiki/Demo-and-batch-scripts#command-line-demo) I got this error:

OPERATION:  Multiresolution tile generation
PHASE:      Initializing...
TIME REMAINING: 0 minutes and 0 seconds
PROGRESS:   0%  ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

terminate called after throwing an instance of 'IconImageManager::IOException'
Cancelled (memory dump written)
iannellog commented 3 years ago

Even this issue could be due to the use of the version using bioformats. Another user had the same problem. Here is what he wrote after solving the problem:

"I finally figured out that my error was due to the wrong loading of the shared library "libjvm.so". I changed the path of my "jre" and the problem was solved. I am now able to merge the tiles correctly."

I hope this can help.

saskra commented 3 years ago

Thanks, then I will try a version without Bioformats.