Hi,
How long should I expect the stitching phase to take for a 100GB + imaris file? I have tested a couple of configurations after the step failed to complete in 72 hours on a cluster job. The cluster is configured with a filesystem configured for good throughout of large files (for genetics work). I suspected that the IO of teraconverter may use lots of smaller IO requests, so I'm now running a test with output to a local filesystem. The system is a fairly typical linux desktop and I see an approximate 20GB increase in output file size in 12 hours. Is this typical? What should I look at to speed it up?
FYI - I have had no success getting the MPI tools to work with hdf5/imaris input or output files.
Hi, How long should I expect the stitching phase to take for a 100GB + imaris file? I have tested a couple of configurations after the step failed to complete in 72 hours on a cluster job. The cluster is configured with a filesystem configured for good throughout of large files (for genetics work). I suspected that the IO of teraconverter may use lots of smaller IO requests, so I'm now running a test with output to a local filesystem. The system is a fairly typical linux desktop and I see an approximate 20GB increase in output file size in 12 hours. Is this typical? What should I look at to speed it up?
FYI - I have had no success getting the MPI tools to work with hdf5/imaris input or output files.
Thanks