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aburrell / apexpy

A Python wrapper for Apex coordinates
MIT License
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BUG: fortranapex fails with symbol not found in flat namespace #99

Closed ljlamarche closed 1 year ago

ljlamarche commented 1 year ago

Description: Yet another instillation issue. This specifically applies to building and installing apexpy from the cloned GitHub repository, following the instructions in this section. After installing the necessary prerequisites to build the package (gfortran, build, and pkg-config), it appears to have successfully build and install the package, however apexpy (specifically fortranapex) cannot be imported:

>>> import apexpy
fortranapex module could not be imported. apexpy probably won't work. Failed with error: dlopen(/Users/e30737/Desktop/Software/apexpy/apexpy/fortranapex.cpython-39-darwin.so, 0x0002): symbol not found in flat namespace (_f2pywrapfint_)/Users/e30737/Desktop/Software/apexpy/apexpy/apex.py:15: UserWarning: fortranapex module could not be imported, so apexpy probably won't work.  Make sure you have a gfortran compiler. Failed with error: dlopen(/Users/e30737/Desktop/Software/apexpy/apexpy/fortranapex.cpython-39-darwin.so, 0x0002): symbol not found in flat namespace (_f2pywrapfint_)
  warnings.warn("".join(["fortranapex module could not be imported, so ",

I've tried many variations on the "known" tricks to solve instillation issues, nothing has worked so far.

To Reproduce: Starting from clean conda environment in cloned apexpy repo (develop branch):

  1. Install gfortran, build, and pkg-config 
    % conda install -c conda-forge gfortran build pkg-config
  2. Build apexpy 
    % python -m build .
  3. Install apexpy 
    % pip install -e .
  4. Start a python session and attempt to import apexpy 
    (apexpy) e30737@arm64-apple-darwin20 apexpy % python
Python 3.9.13 | packaged by conda-forge | (main, May 27 2022, 17:01:00) 
[Clang 13.0.1 ] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import apexpy
fortranapex module could not be imported. apexpy probably won't work. Failed with error: dlopen(/Users/e30737/Desktop/Software/apexpy/apexpy/fortranapex.cpython-39-darwin.so, 0x0002): symbol not found in flat namespace (_f2pywrapfint_)/Users/e30737/Desktop/Software/apexpy/apexpy/apex.py:15: UserWarning: fortranapex module could not be imported, so apexpy probably won't work.  Make sure you have a gfortran compiler. Failed with error: dlopen(/Users/e30737/Desktop/Software/apexpy/apexpy/fortranapex.cpython-39-darwin.so, 0x0002): symbol not found in flat namespace (_f2pywrapfint_)
warnings.warn("".join(["fortranapex module could not be imported, so ",

Speculation: The problem appears to be relates to _f2pywrapfint_ in fortranapex.cpython-39-darwin.so, which is added to the apexpy directory upon pip install. Inspecting fortranapex.cpython-39-darwin.so reveals that _f2pywrapfint_ is listed as undefined.

% nm -g apexpy/fortranapex.cpython-39-darwin.so

Pertinent block:

 000000000001bb90 T _f2pyinitapxshmodule_
                 U _f2pyinitdipole_
                 U _f2pyinitfldcomd_
                 U _f2pyinititra_
                 U _f2pyinitmagcof_
                 U _f2pywrapfint_

Full output of this command is given at the end of this description.

I've found a few other mentions of similar issues, but it's not clear that there is a definite solution (or even that they are necessarily the same problem. I think the most relevant is a quote from this comment: "Somehow, the constant variables in the class are compiled as indirect symbols that cannot be found in flat namespace on macOS using AppleClang++."

Other potentially useful threads: https://github.com/tensorflow/tensorflow/issues/54242 https://github.com/tensorflow/tensorflow/issues/41682 https://github.com/tensorflow/tensorflow/issues/39262 https://github.com/tensorflow/tensorflow/issues/36945

Potentially noteable is the fact that fint is the ONLY portion of fortran source code that is written as a function rather than a module. I never could figure out why this was, but it may be impacting something? I think it's far more liekly that this is a quirk with my setup.

Computer Information:

ljlamarche commented 1 year ago
Full Output of Build ``` (apexpy) e30737@arm64-apple-darwin20 apexpy % python -m build . * Creating venv isolated environment... * Installing packages in isolated environment... (Cython>=0.29.21, meson-python>=0.8.0, numpy, python-dev-tools, setuptools<60.0, wheel) * Getting dependencies for sdist... * Building sdist... + meson setup --native-file=/Users/e30737/Desktop/Software/apexpy/.mesonpy-native-file.ini -Ddebug=false -Doptimization=2 --prefix=/Users/e30737/miniconda3/envs/apexpy /Users/e30737/Desktop/Software/apexpy /Users/e30737/Desktop/Software/apexpy/.mesonpy-e1na6nvx/build The Meson build system Version: 0.64.0 Source dir: /Users/e30737/Desktop/Software/apexpy Build dir: /Users/e30737/Desktop/Software/apexpy/.mesonpy-e1na6nvx/build Build type: native build Project name: apexpy Project version: 1.1.0 C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 14.0.6 "clang version 14.0.6") C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 609 Host machine cpu family: aarch64 Host machine cpu: aarch64 Fortran compiler for the host machine: /Users/e30737/miniconda3/envs/apexpy/bin/arm64-apple-darwin20.0.0-gfortran (gcc 11.3.0 "GNU Fortran (GCC) 11.3.0") Fortran linker for the host machine: /Users/e30737/miniconda3/envs/apexpy/bin/arm64-apple-darwin20.0.0-gfortran ld64 609 Compiler for C supports arguments -Wno-unused-but-set-variable: YES Library m found: YES Program python found: YES (/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-pynni4bs/bin/python) Found pkg-config: /Users/e30737/miniconda3/envs/apexpy/bin/pkg-config (0.29.2) Message: /var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-pynni4bs/bin/python Message: /Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/ Check usable header "Python.h" with dependency python: YES Build targets in project: 3 apexpy 1.1.0 User defined options Native files: /Users/e30737/Desktop/Software/apexpy/.mesonpy-native-file.ini debug : false optimization: 2 prefix : /Users/e30737/miniconda3/envs/apexpy Found ninja-1.11.1.git.kitware.jobserver-1 at /var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-pynni4bs/bin/ninja + meson dist --allow-dirty --no-tests --formats gztar WARNING: Repository has uncommitted changes that will not be included in the dist tarball Created /Users/e30737/Desktop/Software/apexpy/.mesonpy-e1na6nvx/build/meson-dist/apexpy-1.1.0.tar.gz * Building wheel from sdist * Creating venv isolated environment... * Installing packages in isolated environment... (Cython>=0.29.21, meson-python>=0.8.0, numpy, python-dev-tools, setuptools<60.0, wheel) * Getting dependencies for wheel... + meson setup --native-file=/private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-native-file.ini -Ddebug=false -Doptimization=2 --prefix=/Users/e30737/miniconda3/envs/apexpy /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0 /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-jy4fraxo/build The Meson build system Version: 0.64.0 Source dir: /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0 Build dir: /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-jy4fraxo/build Build type: native build Project name: apexpy Project version: 1.1.0 C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 14.0.6 "clang version 14.0.6") C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 609 Host machine cpu family: aarch64 Host machine cpu: aarch64 Fortran compiler for the host machine: /Users/e30737/miniconda3/envs/apexpy/bin/arm64-apple-darwin20.0.0-gfortran (gcc 11.3.0 "GNU Fortran (GCC) 11.3.0") Fortran linker for the host machine: /Users/e30737/miniconda3/envs/apexpy/bin/arm64-apple-darwin20.0.0-gfortran ld64 609 Compiler for C supports arguments -Wno-unused-but-set-variable: YES Library m found: YES Program python found: YES (/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-bfsvee8e/bin/python) Found pkg-config: /Users/e30737/miniconda3/envs/apexpy/bin/pkg-config (0.29.2) Message: /var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-bfsvee8e/bin/python Message: /Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/ Check usable header "Python.h" with dependency python: YES Build targets in project: 3 apexpy 1.1.0 User defined options Native files: /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-native-file.ini debug : false optimization: 2 prefix : /Users/e30737/miniconda3/envs/apexpy Found ninja-1.11.1.git.kitware.jobserver-1 at /var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-bfsvee8e/bin/ninja * Installing packages in isolated environment... (wheel >= 0.36.0) * Building wheel... + meson setup --native-file=/private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-native-file.ini -Ddebug=false -Doptimization=2 --prefix=/Users/e30737/miniconda3/envs/apexpy /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0 /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/build The Meson build system Version: 0.64.0 Source dir: /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0 Build dir: /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/build Build type: native build Project name: apexpy Project version: 1.1.0 C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 14.0.6 "clang version 14.0.6") C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 609 Host machine cpu family: aarch64 Host machine cpu: aarch64 Fortran compiler for the host machine: /Users/e30737/miniconda3/envs/apexpy/bin/arm64-apple-darwin20.0.0-gfortran (gcc 11.3.0 "GNU Fortran (GCC) 11.3.0") Fortran linker for the host machine: /Users/e30737/miniconda3/envs/apexpy/bin/arm64-apple-darwin20.0.0-gfortran ld64 609 Compiler for C supports arguments -Wno-unused-but-set-variable: YES Library m found: YES Program python found: YES (/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-bfsvee8e/bin/python) Found pkg-config: /Users/e30737/miniconda3/envs/apexpy/bin/pkg-config (0.29.2) Message: /var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-bfsvee8e/bin/python Message: /Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/ Check usable header "Python.h" with dependency python: YES Build targets in project: 3 apexpy 1.1.0 User defined options Native files: /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-native-file.ini debug : false optimization: 2 prefix : /Users/e30737/miniconda3/envs/apexpy Found ninja-1.11.1.git.kitware.jobserver-1 at /var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-bfsvee8e/bin/ninja + meson compile INFO: autodetecting backend as ninja INFO: calculating backend command to run: /var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-env-bfsvee8e/bin/ninja [4/14] Generating fortranapexmodule.c with a custom command Reading fortran codes... Reading file '../../fortranapex/magfld.f90' (format:free) Reading file '../../fortranapex/apex.f90' (format:free) Reading file '../../fortranapex/makeapexsh.f90' (format:free) Reading file '../../fortranapex/igrf.f90' (format:free) Reading file '../../fortranapex/apexsh.f90' (format:free) Reading file '../../fortranapex/checkapexsh.f90' (format:free) Post-processing... Block: fortranapex Block: magcof Block: coeffmodule In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:coeffmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: cofrm In: :fortranapex:../../fortranapex/magfld.f90:cofrm get_useparameters: no module igrf info used by cofrm Block: dypol In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:dypol get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: feldg In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:feldg get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: gd2cart In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:gd2cart get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: convrt In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/magfld.f90:convrt get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: apexmodule In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: fint In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apex.f90:apexmodule:fint get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: dipole Block: fldcomd Block: apxin Block: itra Block: apex Block: linapx Block: itrace Block: fndapx Block: dipapx Block: makeapxsh In: :fortranapex:../../fortranapex/makeapexsh.f90:makeapxsh get_useparameters: no module apxshmodule info used by makeapxsh Block: choldc Block: cholsl Block: igrf Block: read_igrf Block: apxshmodule In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 In: :fortranapex:../../fortranapex/apexsh.f90:apxshmodule get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: loadapxsh Block: allocatearrays Block: apxg2q Block: apxg2all Block: apxq2g Block: shcalc Block: alfbasismodule Block: alfbasisinit Block: alfbasis In: :fortranapex:../../fortranapex/apexsh.f90:alfbasis get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Block: checkapexsh In: :fortranapex:../../fortranapex/checkapexsh.f90:checkapexsh get_parameters: got "eval() arg 1 must be a string, bytes or code object" on 4 Post-processing (stage 2)... Block: fortranapex Block: unknown_interface Block: magcof Block: coeffmodule Block: cofrm Block: dypol Block: feldg Block: gd2cart Block: convrt Block: apexmodule Block: fint Block: dipole Block: fldcomd Block: apxin Block: itra Block: apex Block: linapx Block: itrace Block: fndapx Block: dipapx Block: makeapxsh Block: choldc Block: cholsl Block: igrf Block: read_igrf Block: apxshmodule Block: loadapxsh Block: allocatearrays Block: apxg2q Block: apxg2all Block: apxq2g Block: shcalc Block: alfbasismodule Block: alfbasisinit Block: alfbasis Block: checkapexsh Building modules... Building module "fortranapex"... Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "cofrm"... cofrm(date,filename) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "dypol"... colat,elon,vp = dypol() Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "feldg"... bnrth,beast,bdown,babs = feldg(ienty,glat,glon,alt) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "gd2cart"... x,y,z = gd2cart(gdlat,glon,alt) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "convrt"... convrt(i,gdlat,alt,x1,x2) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "apex"... a,alat,alon,bmag,xmag,ymag,zmag,v = apex(date,igrffilein,dlat,dlon,alt) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "linapx"... a,alat,alon,xmag,ymag,zmag,f = linapx(gdlat,glon,alt) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "itrace"... iapx = itrace() Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "fndapx"... a,alat,alon = fndapx(alt,zmag) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "dipapx"... a,alon = dipapx(gdlat,gdlon,alt,bnorth,beast,bdown) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "makeapxsh"... makeapxsh(datafilein,igrffilein,epochgridin,nepochin,lmaxin,mmaxin,nmaxin) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "choldc"... p = choldc(a,n,[np]) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "cholsl"... x = cholsl(a,p,b,[n,np]) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "loadapxsh"... loadapxsh(datafilenew,epochnew) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "allocatearrays"... allocatearrays() Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "apxg2q"... qlatout,qlonout,f1,f2,f = apxg2q(glat,glon,alt,vecflagin) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "apxg2all"... qlatout,qlonout,mlat,mlon,f1,f2,f,d1,d2,d3,d,e1,e2,e3 = apxg2all(glat,glon,alt,hr,vecflagin) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "apxq2g"... glatout,glonout,error = apxq2g(qlat0,qlon0,alt,prec) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "shcalc"... shcalc(theta,phi) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "alfbasisinit"... alfbasisinit(nmax0in,mmax0in) Generating possibly empty wrappers" Maybe empty "fortranapex-f2pywrappers.f" Constructing wrapper function "alfbasis"... p,v,w = alfbasis(nmax,mmax,theta) Constructing F90 module support for "magcof"... Variables: nmax1 ichg gb gv Constructing F90 module support for "coeffmodule"... Variables: pi dtor rtod pid2 twopi req rep eps re ecc2 missing Constructing F90 module support for "apexmodule"... Creating wrapper for Fortran function "fint"("fint")... Constructing wrapper function "apexmodule.fint"... fint = fint(x1,x2,x3,y1,y2,y3,xfit) Constructing F90 module support for "dipole"... Variables: colat elon vp ctp stp Constructing F90 module support for "fldcomd"... Variables: bx by bz bb Constructing F90 module support for "apxin"... Variables: yapx Constructing F90 module support for "itra"... Variables: nstp sgn ds y yold yp Constructing F90 module support for "igrf"... Variables: datel nepo nght epoch nmxe gyr hyr gt ht getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing wrapper function "igrf.read_igrf"... read_igrf(filename_in) Constructing F90 module support for "apxshmodule"... Variables: nterm nmax mmax lmax nepoch ntermsh vecflag coeff0 qcoeff0 gcoeff0 xqcoeff yqcoeff zqcoeff dxqdrhocoeff dyqdrhocoeff dzqdrhocoeff xgcoeff ygcoeff zgcoeff sh shgradtheta shgradphi polynomq dpolynomq polynomg pbar vbar wbar epochgrid h reph rho xq yq zq qlat qlon sinqlat cosqlat cosqlon sinqlon xqgrad yqgrad zqgrad qlatgrad qlongrad datafile epoch altlastq altlastg loadflag getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "alfbasismodule"... Variables: nmax0 mmax0 anm cm bnm dnm en marr narr getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fortranapex" to file "./fortranapexmodule.c" Fortran 90 wrappers are saved to "./fortranapex-f2pywrappers2.f90" [13/14] Compiling Fortran object fortranapex.cpython...p/meson-generated_.._fortranapex-f2pywrappers2.f90.o fortranapex-f2pywrappers2.f90:33:41: 33 | subroutine f2pywrap_apexmodule_fint (fintf2pywrap, x1, x2, x3, y1,& | 1 ...... 49 | subroutine f2pywrap_apexmodule_fint (fintf2pywrap, fint, x1, x2, x& | 2 Warning: 'f2pywrap_apexmodule_fint' has the wrong number of arguments between (1) and (2) fortranapex-f2pywrappers2.f90:288:10: 288 | use igrf, only : datel | 1 Warning: Unused module variable ‘epoch’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:288:10: 288 | use igrf, only : datel | 1 Warning: Unused module variable ‘gt’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:288:10: 288 | use igrf, only : datel | 1 Warning: Unused module variable ‘gyr’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:288:10: 288 | use igrf, only : datel | 1 Warning: Unused module variable ‘ht’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:288:10: 288 | use igrf, only : datel | 1 Warning: Unused module variable ‘hyr’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:288:10: 288 | use igrf, only : datel | 1 Warning: Unused module variable ‘nmxe’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘coeff0’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘dpolynomq’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘dxqdrhocoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘dyqdrhocoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘dzqdrhocoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘epochgrid’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘gcoeff0’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘pbar’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘polynomg’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘polynomq’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘qcoeff0’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘sh’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘shgradphi’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘shgradtheta’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘vbar’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘wbar’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘xgcoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘xqcoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘ygcoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘yqcoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘zgcoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:979:10: 979 | use apxshmodule, only : nterm | 1 Warning: Unused module variable ‘zqcoeff’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:1282:10: 1282 | use alfbasismodule, only : nmax0 | 1 Warning: Unused module variable ‘anm’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:1282:10: 1282 | use alfbasismodule, only : nmax0 | 1 Warning: Unused module variable ‘bnm’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:1282:10: 1282 | use alfbasismodule, only : nmax0 | 1 Warning: Unused module variable ‘cm’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:1282:10: 1282 | use alfbasismodule, only : nmax0 | 1 Warning: Unused module variable ‘dnm’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:1282:10: 1282 | use alfbasismodule, only : nmax0 | 1 Warning: Unused module variable ‘en’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:1282:10: 1282 | use alfbasismodule, only : nmax0 | 1 Warning: Unused module variable ‘marr’ which has been explicitly imported at (1) [-Wunused-variable] fortranapex-f2pywrappers2.f90:1282:10: 1282 | use alfbasismodule, only : nmax0 | 1 Warning: Unused module variable ‘narr’ which has been explicitly imported at (1) [-Wunused-variable] [14/14] Linking target fortranapex.cpython-39-darwin.so ld: warning: -pie being ignored. It is only used when linking a main executable ld: warning: could not create compact unwind for _f2py_igrf_getdims_epoch_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_igrf_getdims_nmxe_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_igrf_getdims_gyr_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_igrf_getdims_hyr_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_igrf_getdims_gt_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_igrf_getdims_ht_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_coeff0_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_qcoeff0_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_gcoeff0_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_xqcoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_yqcoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_zqcoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_dxqdrhocoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_dyqdrhocoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_dzqdrhocoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_xgcoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_ygcoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_zgcoeff_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_sh_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_shgradtheta_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_shgradphi_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_polynomq_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_dpolynomq_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_polynomg_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_pbar_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_vbar_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_wbar_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_apxshmodule_getdims_epochgrid_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_alfbasismodule_getdims_anm_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_alfbasismodule_getdims_cm_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_alfbasismodule_getdims_bnm_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_alfbasismodule_getdims_dnm_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _f2py_alfbasismodule_getdims_en_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_alfbasismodule_getdims_marr_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _f2py_alfbasismodule_getdims_narr_: register 28 saved somewhere other than in frame ld: warning: could not create compact unwind for _cofrm_: registers 72 and 73 not saved contiguously in frame ld: warning: could not create compact unwind for _feldg_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _fndapx_: registers 74 and 75 not saved contiguously in frame ld: warning: could not create compact unwind for _makeapxsh_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for ___igrf_MOD_read_igrf: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _alfbasis_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _shcalc_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _apxg2q_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _alfbasisinit_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _allocatearrays_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _loadapxsh_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _apxg2all_: register 75 saved somewhere other than in frame ld: warning: could not create compact unwind for _apxq2g_: registers 78 and 79 not saved contiguously in frame + meson install --destdir /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install ninja: Entering directory `/private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/build' ninja: no work to do. Installing fortranapex.cpython-39-darwin.so to /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install/Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/apexpy Installing /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/apexpy/__init__.py to /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install/Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/apexpy Installing /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/apexpy/__main__.py to /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install/Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/apexpy Installing /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/apexpy/apex.py to /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install/Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/apexpy Installing /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/apexpy/apexsh.dat to /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install/Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/apexpy Installing /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/apexpy/helpers.py to /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install/Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/apexpy Installing /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/apexpy/igrf13coeffs.txt to /private/var/folders/yf/c17s54f12c1bg0cxdywsxyxjssh4z4/T/build-via-sdist-fxyepf27/apexpy-1.1.0/.mesonpy-tls7g69g/install/Users/e30737/miniconda3/envs/apexpy/lib/python3.9/site-packages/apexpy adding 'apexpy-1.1.0.dist-info/METADATA' adding 'apexpy-1.1.0.dist-info/WHEEL' adding 'apexpy-1.1.0.dist-info/LICENSE' Copying files to wheel... adding 'apexpy/fortranapex.cpython-39-darwin.so' adding 'apexpy/__init__.py' adding 'apexpy/__main__.py' adding 'apexpy/apex.py' adding 'apexpy/apexsh.dat' adding 'apexpy/helpers.py' adding 'apexpy/igrf13coeffs.txt' [6/6] apexpy/igrf13coeffs.txt adding 'apexpy-1.1.0.dist-info/RECORD' Successfully built apexpy-1.1.0.tar.gz and apexpy-1.1.0-cp39-cp39-macosx_12_0_arm64.whl ```
ljlamarche commented 1 year ago
Full Output of Inspecting fortranapex.cpython-39-darwin.so ``` 0000000000009fb4 T _F2PyCapsule_AsVoidPtr 0000000000009fe4 T _F2PyCapsule_Check 0000000000009f80 T _F2PyCapsule_FromVoidPtr 0000000000008308 T _F2PyDict_SetItemString 000000000000843c T _F2PyGetThreadLocalCallbackPtr 0000000000008358 T _F2PySwapThreadLocalCallbackPtr U _PyArg_ParseTupleAndKeywords U _PyCapsule_GetPointer U _PyCapsule_New U _PyCapsule_Type U _PyComplex_Type U _PyDict_DelItemString U _PyDict_GetItemString U _PyDict_New U _PyDict_SetItemString U _PyErr_Clear U _PyErr_Fetch U _PyErr_Format U _PyErr_NewException U _PyErr_NoMemory U _PyErr_NormalizeException U _PyErr_Occurred U _PyErr_Print U _PyErr_Restore U _PyErr_SetString U _PyExc_AttributeError U _PyExc_ImportError U _PyExc_MemoryError U _PyExc_OverflowError U _PyExc_RuntimeError U _PyExc_TypeError U _PyExc_ValueError U _PyException_SetCause U _PyException_SetTraceback U _PyFloat_AsDouble U _PyFloat_Type 00000000000084ac T _PyFortranObject_New 000000000000866c T _PyFortranObject_NewAsAttr 0000000000034520 D _PyFortran_Type U _PyImport_ImportModule 00000000000038f0 T _PyInit_fortranapex U _PyLong_AsLongAndOverflow U _PyLong_AsVoidPtr U _PyLong_FromVoidPtr U _PyMem_Free U _PyMem_Malloc U _PyModule_Create2 U _PyModule_GetDict U _PyNumber_Float U _PyNumber_Long U _PyOS_snprintf U _PyObject_Free U _PyObject_GenericGetAttr U _PyObject_GetAttrString U _PyObject_SetAttrString U _PyObject_Str U _PySequence_Check U _PySequence_GetItem U _PyThreadState_GetDict U _PyType_IsSubtype U _PyType_Type U _PyUnicode_AsASCIIString U _PyUnicode_Concat U _PyUnicode_FromFormat U _PyUnicode_FromString U _PyUnicode_FromStringAndSize U _Py_BuildValue U __PyDict_GetItemStringWithError U __PyObject_New U __Py_Dealloc U __Py_FatalErrorFunc U __Py_NoneStruct 0000000000036660 S ___alfbasismodule_MOD_anm 0000000000036600 S ___alfbasismodule_MOD_bnm 00000000000365c0 S ___alfbasismodule_MOD_cm 0000000000036560 S ___alfbasismodule_MOD_dnm 0000000000036520 S ___alfbasismodule_MOD_en 00000000000364e0 S ___alfbasismodule_MOD_marr 00000000000364d0 S ___alfbasismodule_MOD_mmax0 0000000000036490 S ___alfbasismodule_MOD_narr 0000000000036480 S ___alfbasismodule_MOD_nmax0 000000000000d5a0 T ___apexmodule_MOD_fint 00000000000363f0 S ___apxin_MOD_yapx 0000000000037228 S ___apxshmodule_MOD_altlastg 0000000000037220 S ___apxshmodule_MOD_altlastq 00000000000371b0 S ___apxshmodule_MOD_coeff0 00000000000371a0 S ___apxshmodule_MOD_cosqlat 0000000000037198 S ___apxshmodule_MOD_cosqlon 0000000000036db0 S ___apxshmodule_MOD_datafile 0000000000036d70 S ___apxshmodule_MOD_dpolynomq 0000000000036d30 S ___apxshmodule_MOD_dxqdrhocoeff 0000000000036cf0 S ___apxshmodule_MOD_dyqdrhocoeff 0000000000036cb0 S ___apxshmodule_MOD_dzqdrhocoeff 0000000000036ca0 S ___apxshmodule_MOD_epoch 0000000000036c60 S ___apxshmodule_MOD_epochgrid 0000000000036c00 S ___apxshmodule_MOD_gcoeff0 0000000000036bf0 S ___apxshmodule_MOD_h 0000000000036bec S ___apxshmodule_MOD_lmax 0000000000034aa8 D ___apxshmodule_MOD_loadflag 0000000000036be8 S ___apxshmodule_MOD_mmax 0000000000036be4 S ___apxshmodule_MOD_nepoch 0000000000036be0 S ___apxshmodule_MOD_nmax 0000000000036bdc S ___apxshmodule_MOD_nterm 0000000000036bd8 S ___apxshmodule_MOD_ntermsh 0000000000036b80 S ___apxshmodule_MOD_pbar 0000000000036b40 S ___apxshmodule_MOD_polynomg 0000000000036b00 S ___apxshmodule_MOD_polynomq 0000000000036aa0 S ___apxshmodule_MOD_qcoeff0 0000000000036a98 S ___apxshmodule_MOD_qlat 0000000000036a80 S ___apxshmodule_MOD_qlatgrad 0000000000036a78 S ___apxshmodule_MOD_qlon 0000000000036a60 S ___apxshmodule_MOD_qlongrad 0000000000036a58 S ___apxshmodule_MOD_reph 0000000000036a50 S ___apxshmodule_MOD_rho 0000000000036a10 S ___apxshmodule_MOD_sh 00000000000369d0 S ___apxshmodule_MOD_shgradphi 0000000000036990 S ___apxshmodule_MOD_shgradtheta 0000000000036980 S ___apxshmodule_MOD_sinqlat 0000000000036978 S ___apxshmodule_MOD_sinqlon 0000000000036920 S ___apxshmodule_MOD_vbar 0000000000036918 S ___apxshmodule_MOD_vecflag 00000000000368c0 S ___apxshmodule_MOD_wbar 0000000000036880 S ___apxshmodule_MOD_xgcoeff 0000000000036870 S ___apxshmodule_MOD_xq 0000000000036830 S ___apxshmodule_MOD_xqcoeff 0000000000036810 S ___apxshmodule_MOD_xqgrad 00000000000367d0 S ___apxshmodule_MOD_ygcoeff 00000000000367c0 S ___apxshmodule_MOD_yq 0000000000036780 S ___apxshmodule_MOD_yqcoeff 0000000000036760 S ___apxshmodule_MOD_yqgrad 0000000000036720 S ___apxshmodule_MOD_zgcoeff 0000000000036710 S ___apxshmodule_MOD_zq 00000000000366d0 S ___apxshmodule_MOD_zqcoeff 00000000000366b8 S ___apxshmodule_MOD_zqgrad 0000000000036478 S ___dipole_MOD_colat 0000000000036470 S ___dipole_MOD_ctp 0000000000036468 S ___dipole_MOD_elon 0000000000036460 S ___dipole_MOD_stp 0000000000036458 S ___dipole_MOD_vp 0000000000036450 S ___fldcomd_MOD_bb 0000000000036448 S ___fldcomd_MOD_bx 0000000000036440 S ___fldcomd_MOD_by 0000000000036438 S ___fldcomd_MOD_bz 0000000000035510 S ___igrf_MOD_datel 00000000000354d0 S ___igrf_MOD_epoch 0000000000035470 S ___igrf_MOD_gt 0000000000035400 S ___igrf_MOD_gyr 00000000000353a0 S ___igrf_MOD_ht 0000000000035330 S ___igrf_MOD_hyr 0000000000035324 S ___igrf_MOD_nepo 0000000000035320 S ___igrf_MOD_nght 00000000000352e0 S ___igrf_MOD_nmxe 000000000000a130 T ___igrf_MOD_read_igrf 00000000000363e8 S ___itra_MOD_ds 00000000000363e0 S ___itra_MOD_nstp 00000000000363d8 S ___itra_MOD_sgn 00000000000363c0 S ___itra_MOD_y 00000000000363a0 S ___itra_MOD_yold 0000000000036340 S ___itra_MOD_yp 0000000000035c30 S ___magcof_MOD_gb 0000000000035528 S ___magcof_MOD_gv 0000000000035520 S ___magcof_MOD_ichg 0000000000035518 S ___magcof_MOD_nmax1 U ___sprintf_chk U ___stack_chk_fail U ___stack_chk_guard U ___stderrp U ___strcat_chk U __gfortran_exit_i4 U __gfortran_fseek_sub U __gfortran_ftell U __gfortran_os_error_at U __gfortran_runtime_error U __gfortran_runtime_error_at U __gfortran_set_args U __gfortran_set_options U __gfortran_st_close U __gfortran_st_open U __gfortran_st_read U __gfortran_st_read_done U __gfortran_st_write U __gfortran_st_write_done U __gfortran_stop_string U __gfortran_string_len_trim U __gfortran_transfer_array U __gfortran_transfer_array_write U __gfortran_transfer_character U __gfortran_transfer_character_write U __gfortran_transfer_integer U __gfortran_transfer_integer_write U __gfortran_transfer_real_write 00000000000352d0 S __npy_f2py_ARRAY_API U _acos 000000000000e6f0 T _alfbasis_ 0000000000010f44 T _alfbasisinit_ 00000000000117f0 T _allocatearrays_ 000000000000e560 T _apex_ 0000000000013120 T _apxg2all_ 000000000000f5c0 T _apxg2q_ 0000000000013980 T _apxq2g_ 000000000000910c T _array_from_pyobj U _asin U _atan2 U _bzero U _cexp 0000000000015560 T _choldc_ 00000000000151b0 T _cholsl_ 000000000000c5b4 T _cofrm_ 000000000000c2e0 T _convrt_ 0000000000009f60 T _copy_ND_array U _cos 000000000000d610 T _dipapx_ 000000000000cc44 T _dypol_ 000000000001af20 T _f2py_alfbasismodule_getdims_anm_ 000000000001b2c0 T _f2py_alfbasismodule_getdims_bnm_ 000000000001b130 T _f2py_alfbasismodule_getdims_cm_ 000000000001b4d0 T _f2py_alfbasismodule_getdims_dnm_ 000000000001b6e0 T _f2py_alfbasismodule_getdims_en_ 000000000001b870 T _f2py_alfbasismodule_getdims_marr_ 000000000001ba00 T _f2py_alfbasismodule_getdims_narr_ 0000000000018920 T _f2py_apxshmodule_getdims_coeff0_ 000000000001a440 T _f2py_apxshmodule_getdims_dpolynomq_ 00000000000194a0 T _f2py_apxshmodule_getdims_dxqdrhocoeff_ 0000000000019630 T _f2py_apxshmodule_getdims_dyqdrhocoeff_ 00000000000197c0 T _f2py_apxshmodule_getdims_dzqdrhocoeff_ 000000000001ad90 T _f2py_apxshmodule_getdims_epochgrid_ 0000000000018de0 T _f2py_apxshmodule_getdims_gcoeff0_ 000000000001a760 T _f2py_apxshmodule_getdims_pbar_ 000000000001a5d0 T _f2py_apxshmodule_getdims_polynomg_ 000000000001a2b0 T _f2py_apxshmodule_getdims_polynomq_ 0000000000018bd0 T _f2py_apxshmodule_getdims_qcoeff0_ 0000000000019e00 T _f2py_apxshmodule_getdims_sh_ 000000000001a120 T _f2py_apxshmodule_getdims_shgradphi_ 0000000000019f90 T _f2py_apxshmodule_getdims_shgradtheta_ 000000000001a970 T _f2py_apxshmodule_getdims_vbar_ 000000000001ab80 T _f2py_apxshmodule_getdims_wbar_ 0000000000019950 T _f2py_apxshmodule_getdims_xgcoeff_ 0000000000018ff0 T _f2py_apxshmodule_getdims_xqcoeff_ 0000000000019ae0 T _f2py_apxshmodule_getdims_ygcoeff_ 0000000000019180 T _f2py_apxshmodule_getdims_yqcoeff_ 0000000000019c70 T _f2py_apxshmodule_getdims_zgcoeff_ 0000000000019310 T _f2py_apxshmodule_getdims_zqcoeff_ 000000000001be30 T _f2pyinitalfbasismodule_ U _f2pyinitapxin_ 000000000001bb90 T _f2pyinitapxshmodule_ U _f2pyinitdipole_ U _f2pyinitfldcomd_ U _f2pyinititra_ U _f2pyinitmagcof_ U _f2pywrapfint_ 000000000000ccf0 T _feldg_ U _fint_ 000000000000d7b4 T _fndapx_ U _fprintf U _free 000000000000c210 T _gd2cart_ 000000000000dc50 T _itrace_ 000000000000e1c4 T _linapx_ 0000000000012814 T _loadapxsh_ 000000000001bea0 S _main 0000000000015770 T _makeapxsh_ U _malloc U _memcmp U _memcpy U _memset U _realloc 000000000000efb0 T _shcalc_ U _sin U _snprintf U _sprintf U _strcmp U _strlen U _strncpy U dyld_stub_binder ```
ljlamarche commented 1 year ago

This may not be a completely isolated issue. I managed to (unintentionally) produce something similar installing apexpy on a CentOS7 machine. Here's the specific error:

>>> import apexpy
fortranapex module could not be imported. apexpy probably won't work. Failed with error: /home/llamarche/Tools/apexpy/apexpy/fortranapex.cpython-39-x86_64-linux-gnu.so: undefined symbol: fint_/home/llamarche/Tools/apexpy/apexpy/apex.py:15: UserWarning: fortranapex module could not be imported, so apexpy probably won't work.  Make sure you have a gfortran compiler. Failed with error: /home/llamarche/Tools/apexpy/apexpy/fortranapex.cpython-39-x86_64-linux-gnu.so: undefined symbol: fint_

It's a different error, but still seems related to the fint function.

Steps to reproduce:

  1. Install build requirements
  2. Build apexpy $ FC=/opt/rh/devtoolset-7/root/bin/gfortran CC=/opt/rh/devtoolset-7/root/bin/gcc python -m build .
  3. Install apexpy FC=/opt/rh/devtoolset-7/root/bin/gfortran CC=/opt/rh/devtoolset-7/root/bin/gcc pip install -e .

Full Output of Inspecting fortranapex.cpython-39-x86_64-linux-gnu.so

Full Output of Inspecting fortranapex.cpython-39-x86_64-linux-gnu.so ``` U acos@@GLIBC_2.2.5 00000000000171f0 T alfbasis_ 000000000001b1e0 T alfbasisinit_ 0000000000240a80 B __alfbasismodule_MOD_anm 0000000000240a30 B __alfbasismodule_MOD_bnm 0000000000240a00 B __alfbasismodule_MOD_cm 00000000002409b0 B __alfbasismodule_MOD_dnm 0000000000240980 B __alfbasismodule_MOD_en 0000000000240950 B __alfbasismodule_MOD_marr 0000000000240940 B __alfbasismodule_MOD_mmax0 0000000000240910 B __alfbasismodule_MOD_narr 0000000000240900 B __alfbasismodule_MOD_nmax0 000000000001c5f0 T allocatearrays_ 0000000000016fd0 T apex_ 0000000000015980 T __apexmodule_MOD_fint 000000000001ee90 T apxg2all_ 00000000000190d0 T apxg2q_ 0000000000240840 B __apxin_MOD_yapx 000000000001fb60 T apxq2g_ 00000000002415a0 B __apxshmodule_MOD_altlastg 0000000000241590 B __apxshmodule_MOD_altlastq 0000000000241530 B __apxshmodule_MOD_coeff0 0000000000241520 B __apxshmodule_MOD_cosqlat 0000000000241510 B __apxshmodule_MOD_cosqlon 0000000000241120 B __apxshmodule_MOD_datafile 00000000002410f0 B __apxshmodule_MOD_dpolynomq 00000000002410c0 B __apxshmodule_MOD_dxqdrhocoeff 0000000000241090 B __apxshmodule_MOD_dyqdrhocoeff 0000000000241060 B __apxshmodule_MOD_dzqdrhocoeff 0000000000241050 B __apxshmodule_MOD_epoch 0000000000241020 B __apxshmodule_MOD_epochgrid 0000000000240fd0 B __apxshmodule_MOD_gcoeff0 0000000000240fc0 B __apxshmodule_MOD_h 0000000000240fb0 B __apxshmodule_MOD_lmax 000000000023ee70 D __apxshmodule_MOD_loadflag 0000000000240fa0 B __apxshmodule_MOD_mmax 0000000000240f90 B __apxshmodule_MOD_nepoch 0000000000240f80 B __apxshmodule_MOD_nmax 0000000000240f70 B __apxshmodule_MOD_nterm 0000000000240f60 B __apxshmodule_MOD_ntermsh 0000000000240f10 B __apxshmodule_MOD_pbar 0000000000240ee0 B __apxshmodule_MOD_polynomg 0000000000240eb0 B __apxshmodule_MOD_polynomq 0000000000240e60 B __apxshmodule_MOD_qcoeff0 0000000000240e50 B __apxshmodule_MOD_qlat 0000000000240e30 B __apxshmodule_MOD_qlatgrad 0000000000240e20 B __apxshmodule_MOD_qlon 0000000000240e00 B __apxshmodule_MOD_qlongrad 0000000000240df0 B __apxshmodule_MOD_reph 0000000000240de0 B __apxshmodule_MOD_rho 0000000000240db0 B __apxshmodule_MOD_sh 0000000000240d80 B __apxshmodule_MOD_shgradphi 0000000000240d50 B __apxshmodule_MOD_shgradtheta 0000000000240d40 B __apxshmodule_MOD_sinqlat 0000000000240d30 B __apxshmodule_MOD_sinqlon 0000000000240ce0 B __apxshmodule_MOD_vbar 0000000000240cd0 B __apxshmodule_MOD_vecflag 0000000000240c80 B __apxshmodule_MOD_wbar 0000000000240c50 B __apxshmodule_MOD_xgcoeff 0000000000240c40 B __apxshmodule_MOD_xq 0000000000240c10 B __apxshmodule_MOD_xqcoeff 0000000000240bf0 B __apxshmodule_MOD_xqgrad 0000000000240bc0 B __apxshmodule_MOD_ygcoeff 0000000000240bb0 B __apxshmodule_MOD_yq 0000000000240b80 B __apxshmodule_MOD_yqcoeff 0000000000240b60 B __apxshmodule_MOD_yqgrad 0000000000240b30 B __apxshmodule_MOD_zgcoeff 0000000000240b20 B __apxshmodule_MOD_zq 0000000000240af0 B 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memset@@GLIBC_2.2.5 00000000002415a8 B _npy_f2py_ARRAY_API U PyArg_ParseTupleAndKeywords U Py_BuildValue U PyCapsule_GetPointer U PyCapsule_New U PyCapsule_Type U PyComplex_Type U _Py_Dealloc U PyDict_DelItemString U PyDict_GetItemString U _PyDict_GetItemStringWithError U PyDict_New U PyDict_SetItemString U PyErr_Clear U PyErr_Fetch U PyErr_Format U PyErr_NewException U PyErr_NoMemory U PyErr_NormalizeException U PyErr_Occurred U PyErr_Print U PyErr_Restore U PyErr_SetString U PyExc_AttributeError U PyException_SetCause U PyException_SetTraceback U PyExc_ImportError U PyExc_MemoryError U PyExc_OverflowError U PyExc_RuntimeError U PyExc_TypeError U PyExc_ValueError U _Py_FatalErrorFunc U PyFloat_AsDouble U PyFloat_Type 000000000000f650 T PyFortranObject_New 000000000000f600 T PyFortranObject_NewAsAttr 000000000023e8c0 D PyFortran_Type U PyImport_ImportModule 000000000000e510 T PyInit_fortranapex U PyLong_AsLongAndOverflow U PyLong_AsVoidPtr U PyLong_FromVoidPtr U PyMem_Free U PyMem_Malloc U PyModule_Create2 U PyModule_GetDict U _Py_NoneStruct U PyNumber_Float U PyNumber_Long U PyObject_Free U PyObject_GenericGetAttr U PyObject_GetAttrString U _PyObject_New U PyObject_SetAttrString U PyObject_Str U PyOS_snprintf U PySequence_Check U PySequence_GetItem U PyThreadState_GetDict U PyType_IsSubtype U PyType_Type U PyUnicode_AsASCIIString U PyUnicode_Concat U PyUnicode_FromFormat U PyUnicode_FromString U PyUnicode_FromStringAndSize U realloc@@GLIBC_2.2.5 0000000000018840 T shcalc_ U sincos@@GLIBC_2.2.5 U sin@@GLIBC_2.2.5 U snprintf@@GLIBC_2.2.5 U sprintf@@GLIBC_2.2.5 U sqrtf@@GLIBC_2.2.5 U sqrt@@GLIBC_2.2.5 U stderr@@GLIBC_2.2.5 U strcmp@@GLIBC_2.2.5 U strlen@@GLIBC_2.2.5 U strncpy@@GLIBC_2.2.5 ```

I assume this is still something wierd I'm doing because noone else is having this issue, but I can't figure out what... Unless anyone has a better idea, I might try reformulating fint as a module just to see if it makes the problem magically go away?

aburrell commented 1 year ago

What happens if you use pip without the -e flag?

ljlamarche commented 1 year ago

No such luck, same issue :( ...

aburrell commented 1 year ago

Ah, I got a similar error pairing CC clang with FC gfortran. From your output:

C compiler for the host machine: arm64-apple-darwin20.0.0-clang (clang 14.0.6 "clang version 14.0.6")
C linker for the host machine: arm64-apple-darwin20.0.0-clang ld64 609

It looks like the CC to gcc isn't working?

ljlamarche commented 1 year ago

Ah, I forgot there were sometimes issues with clang! Do you suppose specifying CC to some version of gcc would help? I can try in a few minutes.

aburrell commented 1 year ago

I think it will fix your issue, it worked for me!

ljlamarche commented 1 year ago

Oh no, now it doesn't install at all!

gcc: error: this compiler does not support arm64

Let me see if I can update gcc. The default is identified as "experimental".

aburrell commented 1 year ago

@ljlamarche has this been resolved now?

ljlamarche commented 1 year ago

Yes. Ultimately there's two things to remember when building/testing apexpy:

  1. You can't use the -e flag with meson
  2. You can't test the installation in the apexpy directory because it imports it directly from the source there rather than using the installed and compiled version (which I suspect is fundamentally the same issue)

I don't THINK the gcc thing actually had anything to do with this, although I haven't tested it thoroughly. The instructions to use -e were removed from the documentation, so I think we're set with this!