ipstone
commented
4 years ago Hi @RuofanXia - you have closed this - did you find the solution or what's the reason? I encountered similar problems (I guess library installation issue) when compiling another tool. Thanks
Hi, does anybody have this issue? Compiling with parallel (OpenMP) support g++ -O3 -std=c++11 -DCNVNATOR_VERSION=\"v0.3.3\" -fopenmp -o cnvnator obj/cnvnator.o obj/EXOnator.o obj/HisMaker.o obj/AliParser.o obj/Genotyper.o obj/Interval.o obj/Genome.o samtools/libbam.a samtools/htslib-1.3.1/libhts.a -lz -L/home/ruofan/Downloads/ROOT_INSTALL/root-6.13.02/obj/lib -lCore -lRIO -lHist -lGraf -lGpad -lTree -lMathCore /usr/bin/ld: warning: libpng16.so.16, needed by //home/ruofan/anaconda2/lib/libfreetype.so.6, not found (try using -rpath or -rpath-link) //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference to
png_set_interlace_handling@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_get_io_ptr@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_longjmp_fn@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_gray_to_rgb@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_read_user_transform_fn@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_get_valid@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_get_error_ptr@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_destroy_read_struct@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_palette_to_rgb@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_packing@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_read_end@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_read_fn@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_expand_gray_1_2_4_to_8@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_error@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_strip_16@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_create_read_struct@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_tRNS_to_alpha@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_set_filler@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_get_IHDR@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_create_info_struct@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_read_update_info@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference topng_read_image@PNG16_0' //home/ruofan/anaconda2/lib/libfreetype.so.6: undefined reference to `png_read_info@PNG16_0' collect2: error: ld returned 1 exit status Makefile:59: recipe for target 'cnvnator' failed make: *** [cnvnator] Error 1 Any replies are appreciated!