Is it possible to output copynumber generating from the step Genotyping genomic regions in a batch process?

abyzovlab / CNVnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

Other

209 stars 66 forks source link

Is it possible to output copynumber generating from the step Genotyping genomic regions in a batch process? #120

Closed zjgbz closed 3 years ago

zjgbz commented 6 years ago

Hi CNVnator users,

I am running the step "Genotyping genomic regions" to calculate the copynumber of the regions. But the process to calculate the copynumber can only be realized one region by one region. Is it possible to calculate copynumber of multiple regions and input them to a .out file by bash or python or similar script? Thank you in advance.

Best regards, zjgbz

abyzov commented 6 years ago

Please read the bottom of README file.

Alexej Abyzov, Ph.D. Senior Associate Consultant, Assistant Professor of Biomedical Informatics, Department of Health Sciences Research, Center for Individualized Medicine, Mayo Clinic

Mayo Clinic, 200 1st street SW, Harwick 3-12 Rochester, MN 55905 www.abyzovlab.orghttp://www.abyzovlab.org tel: +1-(507)-538-0978 fax: +1-(507)-284-0745