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abyzovlab / CNVnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
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ERROR plotcircular.py #253

Closed bucongfan closed 2 years ago

bucongfan commented 2 years ago

There are some error happens: Traceback (most recent call last): File "CNVnator-master/plotcircular.py", line 54, in snp = iof.get_signal(c, bs, "SNP maf",snpflag)[1] File "biosoft/CNVnator-master/pytools/io.py", line 121, in getsignal his = self.file.Get("bin" + str(bin_size)).Get(self.signal_name(chr, bin_size, signal, flags)) AttributeError: 'TObject' object has no attribute 'Get' Exception ignored in: <function IO.del at 0x7f6cfa35c940> Traceback (most recent call last): File "CNVnator-master/pytools/io.py", line 62, in del AttributeError: 'CPyCppyy_NoneType' object has no attribute 'Close'

Is the CNV drawing scripts such as plotcircular not included in conda?

suvakov commented 2 years ago

It should be included. Do you have SNP data imported and SNP histograms (-baf step) generated for all chromosomes?

bucongfan commented 2 years ago

Thank you very much for your help!