Open cmatKhan opened 1 year ago
The cnvnator's bioconda repo probably has an installation issue. I will report the issue in bioconda.
For your CNV analysis, you may use CNVpytor
(Updated version of cnvnator
), available at https://github.com/abyzovlab/CNVpytor.
If you would like to use cnvnator
, I would suggest you to install it directly from GitHub.
Thanks Arijit
Hi all,
I am trying to use CNVnator in a nextflow pipeline with the singularity image constructed via bioconda. I am getting this error:
Through bioconda, a docker image is also built. Doing the same thing with docker succeeds:
I am using this on a HPC where I don't have access to docker, hence the need for singularity, unfortunately.
As an aside, when I tried to create a conda environment, I received the following error:
Could be related to https://github.com/NVIDIA/MinkowskiEngine/issues/354. Probably worth a note in the install docs, though, for conda.