abyzovlab / CNVnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
Other
206 stars 65 forks source link

Doc not enough #273

Closed bkaan99 closed 1 year ago

bkaan99 commented 1 year ago

Hello, I am doing research on genome. I am just learning about these topics.

think that the documentation of this tool is insufficient for the initial stage.

Can you post a document that explains the explanations in more detail?

For example, explaining the steps in the workflow in more detail..

abyzov commented 1 year ago

Hi, we now recommend (https://github.com/abyzovlab/CNVpytor) to use CNVpytor instead of CNVnator. Documentation for CNVpytor is more detailed.

Alexej Abyzov, Ph.D. Senior Associate Consultant, Associate Professor of Biomedical Informatics, Department of Quantitative Health Sciences, Center for Individualized Medicine, Mayo Clinic

Mayo Clinic, 200 1st street SW, Harwick 3-12 Rochester, MN 55905 www.abyzovlab.orghttp://www.abyzovlab.org tel: +1-(507)-538-0978

On Sep 30, 2022, at 4:00 AM, Bilge Kaan Gürgen @.**@.>> wrote:

Hello, I am doing research on genome. I am just learning about these topics.

think that the documentation of this tool is insufficient for the initial stage.

Can you post a document that explains the explanations in more detail?

For example, explaining the steps in the workflow in more detail..

— Reply to this email directly, view it on GitHubhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fabyzovlab%2FCNVnator%2Fissues%2F273&data=05%7C01%7CAbyzov.Alexej%40mayo.edu%7Cc444f3dee36b4524346808daa2c2418e%7Ca25fff9c3f634fb29a8ad9bdd0321f9a%7C0%7C0%7C638001252493284362%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=tF0LlTfaJT5PoIagnGpxki54KFDe8qpuomMVYDUfJG0%3D&reserved=0, or unsubscribehttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FACLKGOMM6CUJF2KZSQAB33DWA2T3BANCNFSM6AAAAAAQZSHCEI&data=05%7C01%7CAbyzov.Alexej%40mayo.edu%7Cc444f3dee36b4524346808daa2c2418e%7Ca25fff9c3f634fb29a8ad9bdd0321f9a%7C0%7C0%7C638001252493284362%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=mCvSmlUBGUGk7zHzaQbE1EA0pq3mSuJb%2FR0xvL0wB3A%3D&reserved=0. You are receiving this because you are subscribed to this thread.Message ID: @.***>

bkaan99 commented 1 year ago

Thx!!