Getting the global plot values

abyzovlab / CNVpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

MIT License

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Getting the global plot values #142

Closed vasqomni closed 1 year ago

vasqomni commented 1 year ago

I have been trying to get the values from the plot, and I am trying to figure out the normalization. I thought it was based on the CNV level value at first, but after trying to calculate this value for bin sizes from start to end of chromosome, the plot looks very different. I only care for RD and want the manhattan plot point values for it.

xiucz commented 1 year ago

duplicate question here, https://github.com/abyzovlab/CNVpytor/issues/133