Thank you for this wonderful software! Maybe this is too obvious a request, in the command line getting started documentation visualization section, when making a region plot and including the region for example 1:50M-100M, if your alignment file's chromosome notation is chr# instead of just #, the region coordinates also need be chr1:50M-100M. The documentation acknowledges the need for this notation with the -chr flag but not when including region coordinates. This might just be something useful for future users to see in the documentation.
Hello,
Thank you for this wonderful software! Maybe this is too obvious a request, in the command line getting started documentation visualization section, when making a region plot and including the region for example 1:50M-100M, if your alignment file's chromosome notation is chr# instead of just #, the region coordinates also need be chr1:50M-100M. The documentation acknowledges the need for this notation with the -chr flag but not when including region coordinates. This might just be something useful for future users to see in the documentation.
Thanks