How to download reference genome resource files manually?

abyzovlab / CNVpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

MIT License

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Closed xiekunwhy closed 1 year ago

xiekunwhy commented 1 year ago

Hi,

Is there a way to download reference genome resource files manually, instead of using cnvpytor -download? Because I always connect failed.

Best, Kun

suvakov commented 1 year ago

Yes, you can download them manually from: https://github.com/abyzovlab/CNVpytor/tree/master/cnvpytor/data and store them to the installation destination [PATH]/cnvpytor/data/ folder.

suvakov commented 1 year ago

However, better way is to install cnvpytor directly from github:

pip install git+https://github.com/abyzovlab/CNVpytor.git

xiekunwhy commented 1 year ago

Thank you for your reply, I will pip install git+https://github.com/abyzovlab/CNVpytor.git.