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abyzovlab / CNVpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
MIT License
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CNVpytor for haploid genomes #188

Open GiFleres opened 1 year ago

GiFleres commented 1 year ago

I am using CNVpytor for haploid genomes. I changed the chromosome settings in the reference conf.py from "A" to "S". However, when I plot RD values using manhattan I get the baseline ploidy at 2 instead of 1. Any idea how to fix this? Thank you in advance cauris_newselection