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abyzovlab / CNVpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
MIT License
178 stars 26 forks source link

likelihood picture drawing problem #220

Closed LHlearningcode closed 3 months ago

LHlearningcode commented 3 months ago

Hi there, I am a beginner in cnvpytor software ，and I have a problem with drawing likelihood images. My likelihood signal is not very obvious, which may be due to the sequencing depth and sequencing library preparation method. Anyway, I want to modify the background of the image or something to make my image more contrasty and easier to reflect the content of the image. I tried some panels, but the effect is still not good. Is there any way to customize the color of the image? Thank you very much, this is very important to me. huan liu output regions 0001

arpanda commented 3 months ago

Currently, there is no direct option in CNVpytor to update the background of this image.

The plotting is done using matplotlib's imshow, which uses the default colormap (cmap). However, it is possible to update the default colormap. I have created an example in Google Colab to demonstrate this, which you can view at this link.

Thanks Arijit

LHlearningcode commented 3 months ago

Wow, that's GREAT!!! Thanks a lot!! You are my hero,hahaha! Love from China!