Can I use set annotate without internet access

abyzovlab / CNVpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

MIT License

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Can I use set annotate without internet access #237

Open olya2808 opened 3 weeks ago

olya2808 commented 3 weeks ago

Hello! While using set annotate function of CNVpytor we encountered a problem. Due to safety reasons our hpc cluster doesn't have an internet acceess so we cannot use set annotate function as it is. Is there a way we can still annotate files with your tool? Maybe there is a version of your database that we can use locally? It will be very helpfull in out work. Thank you!

arpanda commented 2 weeks ago

Hi, Currently, the annotation is done using Ensembl API and there is no option to do using local download. We hope to have the annotation using local files in the future.

Thank you, Arijit