cmadjar
commented
6 months ago - [x] run minc_insertion.pl on a MINC that belongs to a valid UploadID with a valid protocol and ensure scan type is recognized and MINC file inserted into the files table with all the MINC header information in parameter_file
- [x] run minc_insertion.pl on a MINC that belongs to a valid UploadID with an invalid protocol (scan type is unknown) => check that the MINC file gets moved to trashbin and an entry is added in mri_protocol_violated_scans
- [x] run minc_insertion.pl on a MINC that belongs to a valid UploadID with a valid protocol (scan type identified) but an exclusionary check is identified (from mri_protocol_checks) => check that the MINC file gets moved to trashbin and an entry is added in mri_violations_log
- [x] run minc_insertion.pl on a MINC that belongs to a valid UploadID with a valid protocol (scan type identified) but an warning check is identified (from mri_protocol_checks) => check that the MINC file gets moved to assembly and the files, parameter_file and mri_violations_log tables were updated
- [x] ensure the -create_minc_pics generates the pic and insert it in the DB when running minc_insertion.pl
- [x] run minc_insertion.pl with the -uploadID and -tarchivePath options => should issue an error that you need to specify one or the other