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aces / Loris-MRI

The set of scripts that preprocess and insert MRI data into the database.
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[imaging_non_minc_insertion.pl] mismatch in CandID/PSCID #1120

Closed regisoc closed 2 months ago

regisoc commented 2 months ago

When running on raisinbread data:

(loris-mri-python) --:/opt/Loris-MRI/bin/mri/uploadNeuroDB$ ./imaging_non_minc_insertion.pl
  -profile prod 
  -file_path /data-raisinbread/assembly/587630/V1/mri/native/demo_587630_V1_t1_001.nii
  -output_type native
  -scan_type t1
  -date_acquired 2023-10-10
  -scanner_id 1
  -coordin_space native
  -upload_id 62

Or even on replicated data with the replication script (/data-raisinbread copied to /data/data-raisinbread):

(loris-mri-python) --:/opt/Loris-MRI/bin/mri/uploadNeuroDB$ ./imaging_non_minc_insertion.pl
  -profile prod
  -file_path /data/data-raisinbread/assembly/587630/V1/mri/native/demo_587630_V1_t1_001.nii
  -output_type native
  -scan_type t1
  -date_acquired 2023-10-10
  -scanner_id 1
  -coordin_space native
  -upload_id 62

This error/log occurred:

PSCID is: demo
 CandID id: 587630
 visit_label is: V1
PSCID is: demo
 CandID id: 587630
 visit_label is: V1
PSCID and CandID of the image mismatch
Spool message is: PSCID and CandID of the image mismatch

    ERROR: Candidate IDs mismatch for /data-raisinbread/assembly/587630/V1/mri/native/demo_587630_V1_t1_001.nii.
regisoc commented 2 months ago

Nvm it was linked to the file name. No issue here.