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aces / Loris-MRI

The set of scripts that preprocess and insert MRI data into the database.
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[run_defacing_script.pl] Defacing failing with error in register_processed_data #982

Open zaliqarosli opened 1 year ago

zaliqarosli commented 1 year ago 
run_defacing_script.pl -profile prod -sessionIDs 2145

...

Transforming slices:................................................................................................................................................................Done
Transforming slices:..........................................................................................Done
Copying chunks:.Done.
Transforming slices:................................................................................................................................................................Done
Copying chunks:................................................................................................................................................................Done.
Copying chunks:................................................................................................................................................................Done.
Constant subroutine NeuroDB::objectBroker::ConfigOB::CREATE_CANDIDATES redefined at /usr/lib/x86_64-linux-gnu/perl-base/constant.pm line 171.
PSCID is: DCC292
 CandID id: 676061
 visit_label is: V1
Argument "8Exiting now\n\n" isn't numeric in right bitshift (>>) at /opt/Loris-MRI/bin/mri/tools/run_defacing_script.pl line 682.
Argument "\nAn error occurred when running register_processed_data..." isn't numeric in right bitshift (>>) at /opt/Loris-MRI/bin(

processed defaced files/dir not appearing in /data/Loris-MRI/data/assembly/676061/V1/mri/

github-actions[bot] commented 2 months ago

This issue is stale because it has been open 1 year with no activity. Remove stale label or comment or this will be closed in 3 months.