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aces / cbrain

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
GNU General Public License v3.0
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Propagate environment variables to container fixes #1266 #1272

Closed MontrealSergiy closed 2 years ago

MontrealSergiy commented 2 years ago

@natacha-beck ok the boutiques description is contrived. It is test/demo descriptor for the new module. May be better remove it from this repo and/or put elsewhere?

natacha-beck commented 2 years ago

One general question, should we update the tool.config id a container engine exist ?

MontrealSergiy commented 2 years ago

One general question, should we update the tool.config id a container engine exist ?

Not sure since few to no new tools deployed in a singularity, but, If you like, fine

prioux commented 2 years ago

This pool request doesn't do at all what I wanted.

The original issue #1266 is about the singularity execution layer, not about Boutiques integration. The code that needs to be changed is in the CBRAIN framework.

I am closing this PR because CBRAIN doesn't need at all a solution at this level of the execution stack.