GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
I mostly work with WGS data, and I generate my own maximum likelihood phylogenies, but for some datasets I find the easy MST representation GrapeTree offers really useful, so input my trees into the GrapeTree-Standalone package. However, I would like to be able to access the MST network object, e.g. so I can change the colour schemes programmatically, or so I can perform network analyses using e.g. iGraph. Is there a way to export the network in an iGraph readable format from GrapeTree-Standalone?
I mostly work with WGS data, and I generate my own maximum likelihood phylogenies, but for some datasets I find the easy MST representation GrapeTree offers really useful, so input my trees into the GrapeTree-Standalone package. However, I would like to be able to access the MST network object, e.g. so I can change the colour schemes programmatically, or so I can perform network analyses using e.g. iGraph. Is there a way to export the network in an iGraph readable format from GrapeTree-Standalone?
Thanks, Mat