ShibaPrasad
commented
4 years ago Hi, I need small help for the Chest Imaging Platform (CIP) installation in Linus Ubuntu & python set up and looking for the installation steps. Basically I would like to use the “GeneratePartialLungLabelMap” function in my main python code for whole lung segmentation.
Please help me.
@Hi, i encountered a problem when using imagechest[latform in my own computer, and i don't know how to fix it. when i run the file test_airway_particle.py, and it goes like this Resetting param groups... Building param groups... Starting pass 1... puller -sscp c:\users\administrator\appdata\local\temp\tmpttwliy -cbst true -vol c:\users\administrator\appdata\local\temp\tmpttwliy\ct-deconv.nrrd:scalar:0-10-6.0-o:V c:\users\administrator\appdata\local\temp\tmpttwliy\ct-deconv.nrrd:scalar:0-10-6.0-on:VSN D:\workspace\2\cip_python\particles\tests/../../../Testing/Data/Input/vessel_vesselSeedsMask.nrrd:scalar:M -nave true -v 0 -pbm 0 -bsp bleed -info h-c:V:val:0:-1 hgvec:V:gvec hhess:V:hess tan1:V:hevec1 tan2:V:hevec2 sthr:VSN:heval1:-80:-1 lthr:VSN:heval1:-100:-1 strn:VSN:heval1:0:-1 spthr:M:val:0.5:1 -enr qwell:0.7 -ens bparab:10,0.7,-0.00 -enw butter:10,0.7 -efs false -int uni -irad 1.5 -srad 1.2 -alpha 1.0 -beta 0.77 -gamma 0.37 -ppv 2 -nss 2 -jit 1 -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pcp 6 -edpcmin 0.1 -edmin 0.0000001 -eip 0.00001 -ess 0.5 -oss 2.0 -step 1 -maxci 10 -rng 45 -bws 1.3 -o _c:\users\administrator\appdata\local\temp\tmpttwliy\pass1.nrrd -maxi 100
ERROR: error parsing "c:\users\administrator\appdata\local\temp\tmpttwliy\ct-deconv.nrrd:scalar:0-10-6.0-o:V"_
(in "c:\users\administrator\appdata\local\temp\tmpttwliy\ct-deconv.nrrd:scalar:0-10-6.0-o:V c:\users\administrator\appdata\local\temp\tmpttwliy\ct-deconv.nrrd:scalar:0-10-6.0-on:VSN D:\workspace\2\cip_python\particles\tests/../../../Testing/Data/Input/vessel_vesselSeedsMask.nrrd:scalar:M") as meetPullVol for "-vol" option: [meet] meetPullVolParse: couldn't parse "\users\administrator\appdata\local\temp\tmpttwliy\ct-deconv.nrrd" as kind
i install the software teem successfully, and other commands work well. the file ct-deconv.nrrd generated successfully in C:\Users\Administrator\AppData\Local\Temp\tmpttwliy. i don't konw what's wrong, can you help me ? looking forward to your reply.