acil-bwh / ChestImagingPlatform

Chest Imaging Platform (CIP)
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gprobe giving function deprecation warnings #7

Open jcross186 opened 9 years ago

jcross186 commented 9 years ago

%run airway_particles.py -i /Users/jross/Downloads/ChestImagingPlatform/Testing/Data/Input/airway.nrrd -o /Users/jross/tmp/tmp.vtk -t /Users/jross/tmp/foo/

Produces the following output when gprobe is invoked:

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q totalcurv -v 0 -o /Users/jross/tmp/foo/totalcurv.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q meancurv -v 0 -o /Users/jross/tmp/foo/meancurv.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q hess -v 0 -o /Users/jross/tmp/foo/hess.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q val -v 0 -o /Users/jross/tmp/foo/val.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q hf -v 0 -o /Users/jross/tmp/foo/hf.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q flowlinecurv -v 0 -o /Users/jross/tmp/foo/flowlinecurv.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q 2dd -v 0 -o /Users/jross/tmp/foo/2dd.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q lapl -v 0 -o /Users/jross/tmp/foo/lapl.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q curvdir2 -v 0 -o /Users/jross/tmp/foo/curvdir2.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q curvdir1 -v 0 -o /Users/jross/tmp/foo/curvdir1.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q gausscurv -v 0 -o /Users/jross/tmp/foo/gausscurv.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q heval0 -v 0 -o /Users/jross/tmp/foo/heval0.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q heval1 -v 0 -o /Users/jross/tmp/foo/heval1.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q heval2 -v 0 -o /Users/jross/tmp/foo/heval2.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q kappa1 -v 0 -o /Users/jross/tmp/foo/kappa1.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q kappa2 -v 0 -o /Users/jross/tmp/foo/kappa2.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q gmag -v 0 -o /Users/jross/tmp/foo/gmag.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q hmode -v 0 -o /Users/jross/tmp/foo/hmode.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q gvec -v 0 -o /Users/jross/tmp/foo/gvec.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q hevec1 -v 0 -o /Users/jross/tmp/foo/hevec1.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q hevec0 -v 0 -o /Users/jross/tmp/foo/hevec0.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q hevec2 -v 0 -o /Users/jross/tmp/foo/hevec2.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q median -v 0 -o /Users/jross/tmp/foo/median.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q st -v 0 -o /Users/jross/tmp/foo/st.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

gprobe -i /Users/jross/tmp/foo/ct-deconv.nrrd -k scalar -k00 c4h -k11 c4hd -k22 c4hdd -kssr hermite -kssb ds:1,5 -pi /Users/jross/tmp/foo/pass3.nrrd -q si -v 0 -o /Users/jross/tmp/foo/si.nrrd -ssn 5 -sso -ssr 0 006 -ssf /Users/jross/tmp/foo/V-%03u-005.nrrd -ssnd

gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!

finished probing