search

acil-bwh / SlicerCIP

Slicer extension for the Chest Imaging Platform
BSD 3-Clause "New" or "Revised" License
15 stars 22 forks source link

Lung lesion analyzer run fail with Slicer5.x #42

Open phoenixsfly opened 1 year ago

phoenixsfly commented 1 year ago

environment: OS: Windows11 Slicer Ver: 5.2.1 stable release CIP: install from slicer extension manager

I used this lung lesion analyzer in the tutorial to segmnet lung nodule. I patched seed point and clicked "Segment nodule" button, the program ran for a while and displayed "Status: Completed with errors"

Lesion Segmentation terminated with an unknown exception.

Traceback (most recent call last): File "C:/Users/uu/AppData/Local/NA-MIC/Slicer 5.2.1/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2181, in result.AddObserver("ModifiedEvent", lambda caller, event: self.onNoduleSegmentationCLIStateUpdated( File "C:/Users/uu/AppData/Local/NA-MIC/Slicer 5.2.1/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2420, in onNoduleSegmentationCLIStateUpdated raise Exception("The Nodule Segmentation CLI failed") Exception: The Nodule Segmentation CLI failed

I have done the same things on Ubuntu, the task also failed with:

Lesion Segmentation standard error: terminate called after throwing an instance of 'slicer_itk::ExceptionObject' what(): /work/Stable/Slicer-0-build/ITK/Modules/Core/SpatialObjects/include/itkSpatialObjectPoint.hxx:59: ITK ERROR: SpatialObjectPoint(0x1218f10): The SpatialObject must be set prior to calling.

Traceback (most recent call last): File "/home/uu/Slicer-5.2.1-linux-amd64/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2181, in result.AddObserver("ModifiedEvent", lambda caller, event: self.onNoduleSegmentationCLIStateUpdated( File "/home/uu/Slicer-5.2.1-linux-amd64/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2420, in onNoduleSegmentationCLIStateUpdated raise Exception("The Nodule Segmentation CLI failed") Exception: The Nodule Segmentation CLI failed

I try to reinstall Slicer with 5.1.0 and 5.0.0, the the same issue occured Finally, I download SlicerCIP integrated(4.10.2), everything is OK. So I guess CIP is not compatible with Slicer5.x, right?

rbumm commented 1 year ago

You are right - CIP lung lesion analyzer is currently not compatible with Slicer 5. 

We may take it out of the selection to leave only functional modules in there.

rjosest commented 1 year ago

Hello,Thank you for reporting this issue. We can look into this.If you are interested in this module, you could use the prebuilt SlicerCIP version that we support. You can download it from here:Downloadchestimagingplatform.orgThanksRaulOn Feb 17, 2023, at 12:46 AM, phoenixsfly @.***> wrote: environment: OS: Windows11 Slicer Ver: 5.2.1 stable release CIP: install from slicer extension manager I used this lung lesion analyzer in the tutorial to segmnet lung nodule. I patched seed point and clicked "Segment nodule" button, the program ran for a while and displayed "Status: Completed with errors"

Lesion Segmentation terminated with an unknown exception.

Traceback (most recent call last): File "C:/Users/uu/AppData/Local/NA-MIC/Slicer 5.2.1/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2181, in result.AddObserver("ModifiedEvent", lambda caller, event: self.onNoduleSegmentationCLIStateUpdated( File "C:/Users/uu/AppData/Local/NA-MIC/Slicer 5.2.1/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2420, in onNoduleSegmentationCLIStateUpdated raise Exception("The Nodule Segmentation CLI failed") Exception: The Nodule Segmentation CLI failed

I have done the same things on Ubuntu, the task also failed with:

Lesion Segmentation standard error: terminate called after throwing an instance of 'slicer_itk::ExceptionObject' what(): /work/Stable/Slicer-0-build/ITK/Modules/Core/SpatialObjects/include/itkSpatialObjectPoint.hxx:59: ITK ERROR: SpatialObjectPoint(0x1218f10): The SpatialObject must be set prior to calling.

Traceback (most recent call last): File "/home/uu/Slicer-5.2.1-linux-amd64/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2181, in result.AddObserver("ModifiedEvent", lambda caller, event: self.onNoduleSegmentationCLIStateUpdated( File "/home/uu/Slicer-5.2.1-linux-amd64/NA-MIC/Extensions-31317/Chest_Imaging_Platform/lib/Slicer-5.2/qt-scripted-modules/CIP_LesionModel.py", line 2420, in onNoduleSegmentationCLIStateUpdated raise Exception("The Nodule Segmentation CLI failed") Exception: The Nodule Segmentation CLI failed

I try to reinstall Slicer with 5.1.0 and 5.0.0, the the same issue occured Finally, I download SlicerCIP integrated(4.10.0), everything is OK. So I guess CIP is not compatible with Slicer5.x, right?

—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you are subscribed to this thread.Message ID: @.***>

phoenixsfly commented 1 year ago

You are right - CIP lung lesion analyzer is currently not compatible with Slicer 5. 

We may take it out of the selection to leave only functional modules in there.

I see.... It is hoped that the nodule segmentation function will be preserved and compatible with the Slicer5 as soon.🫥