I followed the steps in "Making an antigenic map from titer data" to generate an antigenic map using the example data "extdata/h3map2004_hitable.csv". I got a map which is similar to the map in this introduction. I just wonder, do the steps in "Making an antigenic map from titer data" already convert the titer in "extdata/h3map2004_hitable.csv" onto the log scale? Or do I need to do extra steps of log titer conversion and then using acmap(map) and optimizeMap(map) to generate an antigenic map?
And I also wonder execpt for the transformation $log2(x/10)$, is there anyother option for titer transformation? I mean can I choose other menthods for titer transformation?
Thanks for your attention and I am looking forward to your reply.
I followed the steps in "Making an antigenic map from titer data" to generate an antigenic map using the example data "extdata/h3map2004_hitable.csv". I got a map which is similar to the map in this introduction. I just wonder, do the steps in "Making an antigenic map from titer data" already convert the titer in "extdata/h3map2004_hitable.csv" onto the log scale? Or do I need to do extra steps of log titer conversion and then using acmap(map) and optimizeMap(map) to generate an antigenic map?
And I also wonder execpt for the transformation $log2(x/10)$, is there anyother option for titer transformation? I mean can I choose other menthods for titer transformation?
Thanks for your attention and I am looking forward to your reply.