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acxz / gazebo-arch

A collection of Arch Linux PKGBUILDS for the Gazebo Simulator
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[gazebo] Symbol look up error #80

Closed fromtheeast710 closed 1 year ago

fromtheeast710 commented 1 year ago

I'm having trouble running gazebo, which fails to start and return:

gazebo-11.12.0: symbol lookup error: /usr/lib/libignition-msgs5.so.5: undefined symbol: _ZN6google8protobuf13RepeatedFieldIdED1Ev

The package I'm using is ros-noetic-desktop-full 1.5.0-2 from the AUR.

The default installation use libprotobuf.so.23 but that was not available on my machine so I symlinked it from /usr/lib/libprotobuf.so.23.4.0

jackpittenger commented 1 year ago

Try checking out the commit from this PR and using makepkg -si. Fixed this issue for me yesterday.

fromtheeast710 commented 1 year ago

@realSaddy Thank you and that did solve the problem with libignition-msgs-5 but then gazebo showed this error:

gazebo: symbol lookup error: /usr/lib/libignition-fuel_tools4.so.4: undefined symbol: _ZN8ignition4msgs12FuelMetadataC1EPN6google8protobuf5ArenaEb

So I recompiled ignition-fuel_tools-4 too and that led to ignition-transport-8 showing that error message. However, I was unable to recompile that package.

Here's the full log:

$ mkpkg -si
==> WARNING: Cannot find the sudo binary. Will use su to acquire root privileges.
==> Making package: ignition-transport-8 8.4.0-2 (Sun 06 Aug 2023 07:10:02 PM AEST)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
  -> Found ignition-transport8_8.4.0.tar.gz
==> Validating source files with sha256sums...
    ignition-transport8_8.4.0.tar.gz ... Passed
==> Extracting sources...
  -> Extracting ignition-transport8_8.4.0.tar.gz with bsdtar
==> Removing existing $pkgdir/ directory...
==> Starting build()...
-- ignition-transport8 version 8.4.0
-- Operating system is Linux
-- 

-- ====== Finding Dependencies ======
-- Looking for Protobuf - found

-- Looking for ZeroMQ - found

CMake Warning at CMakeLists.txt:59 (message):
  lsb_release executable not found.  Disabling focal-specific workarounds

-- Looking for CppZMQ - not found

-- Checking for module 'uuid'
--   Found uuid, version 2.39.1
-- Looking for UUID - found

-- Looking for ignition-msgs5 -- found version 5.11.0
-- Searching for dependencies of ignition-msgs5
-- Looking for ignition-math6 -- found version 6.14.0
-- Searching for dependencies of ignition-math6
-- Checking for module 'tinyxml2'
--   Found tinyxml2, version 9.0.0
-- Looking for ignition-msgs5 - found

-- Looking for IFADDRS - found

-- Checking for module 'sqlite3 >= 3.7.13'
--   Found sqlite3 , version 3.42.0
-- Looking for sqlite3 - found

CMake Error at /usr/share/cmake/ignition-cmake2/cmake2/IgnConfigureBuild.cmake:59 (message):
  -- BUILD ERRORS: These must be resolved before compiling.
Call Stack (most recent call first):
  CMakeLists.txt:112 (ign_configure_build)

CMake Error at /usr/share/cmake/ignition-cmake2/cmake2/IgnConfigureBuild.cmake:61 (message):
  --    Missing dependency [CppZMQ]
Call Stack (most recent call first):
  CMakeLists.txt:112 (ign_configure_build)

CMake Error at /usr/share/cmake/ignition-cmake2/cmake2/IgnConfigureBuild.cmake:63 (message):
  -- END BUILD ERRORS

Call Stack (most recent call first):
  CMakeLists.txt:112 (ign_configure_build)

CMake Error at /usr/share/cmake/ignition-cmake2/cmake2/IgnConfigureBuild.cmake:68 (message):
  Errors encountered in build.  Please see BUILD ERRORS above.
Call Stack (most recent call first):
  CMakeLists.txt:112 (ign_configure_build)

-- Configuring incomplete, errors occurred!
==> ERROR: A failure occurred in build().
    Aborting...
jackpittenger commented 1 year ago

@fromtheeast710 Check out this PR and build ignition-transport-8. @acxz any word on when these prs will be merged? arch upstream is broken currently because of these issues

fromtheeast710 commented 1 year ago

@realSaddy Finally got the time to get around this. I have recompiled the package but now I'm stuck at

gzserver: symbol lookup error: /usr/lib/libgazebo_msgs.so.11: undefined symbol: _ZN6google8protobuf13RepeatedFieldIjED1Ev

What should I do next?

Thank you very much for the help.

@acxz Can we please merge the PRs?

jackpittenger commented 1 year ago

@fromtheeast710 Looks like you updated protobuf since the last build of gazebo_msgs. Try rebuilding gazebo_msgs

fromtheeast710 commented 1 year ago

@realSaddy I have rebuilt ros-noetic-gazebo-msgs but the problem still persist. Or am I misunderstanding you?

fromtheeast710 commented 1 year ago

@realSaddy Sorry for keep mentioning you but I'm really stuck here. I have tried everything including rebuilding all packages and gazebo but gazebo failed to compile and I'm stuck at:

gzserver: symbol lookup error: /usr/lib/libgazebo_msgs.so.11: undefined symbol: _ZN6google8protobuf13RepeatedFieldIjED1Ev

How did you get it working on your machine and what do you mean by my protobuf was updated? Originally I used the packages from arch4edu because the ones from AUR failed to compile.

I just want to get my project started ;_;

jackpittenger commented 1 year ago

@fromtheeast710 Np. Can you try checking out this PR and running sudo makepkg -si inside of ignition-msgs-5?

fromtheeast710 commented 1 year ago

That didn't fix the problem sadly. When I did:

$ yay -Qo /usr/lib/libgazebo_msgs.so.11
/usr/lib/libgazebo_msgs.so.11 is owned by gazebo 11.12.0-7

So I think the problem is with gazebo itself but gazebo failed to compile on my machine with error:

[ 51%] Building CXX object gazebo/physics/CMakeFiles/gazebo_physics.dir/BoxShape.cc.o
In file included from /home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.hh:20,
                 from /home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:27:
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:42:23: error: ‘uint32_t’ does not name a type
   42 |       public: typedef uint32_t Perm;
      |                       ^~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:26:1: note: ‘uint32_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
   25 | #include "gazebo/util/system.hh"
  +++ |+#include <cstdint>
   26 | 
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:52:52: error: ‘Perm’ has not been declared
   52 |       public: const Ogre::MaterialPtr &GetMaterial(Perm permutation);
      |                                                    ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:63:29: error: ‘Perm’ has not been declared
   63 |                             Perm _permutation) = 0;
      |                             ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:65:29: error: ‘Perm’ has not been declared
   65 |                             Perm _permutation) = 0;
      |                             ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:67:29: error: ‘Perm’ has not been declared
   67 |                             Perm permutation) = 0;
      |                             ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:71:61: error: ‘Perm’ has not been declared
   71 |       protected: const Ogre::GpuProgramPtr &GetVertexShader(Perm _perm);
      |                                                             ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:72:63: error: ‘Perm’ has not been declared
   72 |       protected: const Ogre::GpuProgramPtr &GetFragmentShader(Perm _perm);
      |                                                               ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:73:63: error: ‘Perm’ has not been declared
   73 |       protected: const Ogre::MaterialPtr &GetTemplateMaterial(Perm _perm);
      |                                                               ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:81:18: error: ‘Perm’ does not name a type
   81 |       protected: Perm vsMask;
      |                  ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:84:18: error: ‘Perm’ does not name a type
   84 |       protected: Perm fsMask;
      |                  ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:87:18: error: ‘Perm’ does not name a type
   87 |       protected: Perm matMask;
      |                  ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:92:35: error: ‘Perm’ was not declared in this scope
   92 |       protected: typedef std::map<Perm, Ogre::GpuProgramPtr> ProgramMap;
      |                                   ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:92:60: error: template argument 1 is invalid
   92 |       protected: typedef std::map<Perm, Ogre::GpuProgramPtr> ProgramMap;
      |                                                            ^
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:92:60: error: template argument 3 is invalid
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:92:60: error: template argument 4 is invalid
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:93:35: error: ‘Perm’ was not declared in this scope
   93 |       protected: typedef std::map<Perm, Ogre::MaterialPtr> MaterialMap;
      |                                   ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:93:58: error: template argument 1 is invalid
   93 |       protected: typedef std::map<Perm, Ogre::MaterialPtr> MaterialMap;
      |                                                          ^
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:93:58: error: template argument 3 is invalid
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/MaterialGenerator.hh:93:58: error: template argument 4 is invalid
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.hh:75:28: error: ‘uint32_t’ does not name a type
   75 |       public: static const uint32_t FS_MASK = 0x0000FFFF;
      |                            ^~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.hh:22:1: note: ‘uint32_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
   21 | #include "gazebo/util/system.hh"
  +++ |+#include <cstdint>
   22 | 
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.hh:78:28: error: ‘uint32_t’ does not name a type
   78 |       public: static const uint32_t VS_MASK = 0x00FFFF00;
      |                            ^~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.hh:78:28: note: ‘uint32_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.hh:81:28: error: ‘uint32_t’ does not name a type
   81 |       public: static const uint32_t MAT_MASK = 0xFF00FFFF;
      |                            ^~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.hh:81:28: note: ‘uint32_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:47:18: error: ‘gazebo::rendering::MaterialGenerator::Perm’ has not been declared
   47 |                  MaterialGenerator::Perm permutation);
      |                  ^~~~~~~~~~~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:49:18: error: ‘gazebo::rendering::MaterialGenerator::Perm’ has not been declared
   49 |                  MaterialGenerator::Perm permutation);
      |                  ^~~~~~~~~~~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:51:18: error: ‘gazebo::rendering::MaterialGenerator::Perm’ has not been declared
   51 |                  MaterialGenerator::Perm permutation);
      |                  ^~~~~~~~~~~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc: In constructor ‘gazebo::rendering::GBufferMaterialGenerator::GBufferMaterialGenerator(GBufferType)’:
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:61:3: error: ‘vsMask’ was not declared in this scope
   61 |   vsMask = VS_MASK;
      |   ^~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:61:12: error: ‘VS_MASK’ was not declared in this scope
   61 |   vsMask = VS_MASK;
      |            ^~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:62:3: error: ‘fsMask’ was not declared in this scope
   62 |   fsMask = FS_MASK;
      |   ^~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:62:12: error: ‘FS_MASK’ was not declared in this scope
   62 |   fsMask = FS_MASK;
      |            ^~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:63:3: error: ‘matMask’ was not declared in this scope
   63 |   matMask = MAT_MASK;
      |   ^~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:63:13: error: ‘MAT_MASK’ was not declared in this scope
   63 |   matMask = MAT_MASK;
      |             ^~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc: At global scope:
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:86:21: error: ‘Ogre::GpuProgramPtr GBufferMaterialGeneratorImpl::GenerateVertexShader’ is not a static data member of ‘class GBufferMaterialGeneratorImpl’
   86 | Ogre::GpuProgramPtr GBufferMaterialGeneratorImpl::GenerateVertexShader(
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:87:24: error: ‘Perm’ is not a member of ‘gazebo::rendering::MaterialGenerator’
   87 |     MaterialGenerator::Perm _permutation)
      |                        ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:88:1: error: expected ‘,’ or ‘;’ before ‘{’ token
   88 | {
      | ^
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:159:21: error: ‘Ogre::GpuProgramPtr GBufferMaterialGeneratorImpl::GenerateFragmentShader’ is not a static data member of ‘class GBufferMaterialGeneratorImpl’
  159 | Ogre::GpuProgramPtr GBufferMaterialGeneratorImpl::GenerateFragmentShader(
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:160:24: error: ‘Perm’ is not a member of ‘gazebo::rendering::MaterialGenerator’
  160 |     MaterialGenerator::Perm _permutation)
      |                        ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:161:1: error: expected ‘,’ or ‘;’ before ‘{’ token
  161 | {
      | ^
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:301:19: error: ‘Ogre::MaterialPtr GBufferMaterialGeneratorImpl::GenerateTemplateMaterial’ is not a static data member of ‘class GBufferMaterialGeneratorImpl’
  301 | Ogre::MaterialPtr GBufferMaterialGeneratorImpl::GenerateTemplateMaterial(
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:302:24: error: ‘Perm’ is not a member of ‘gazebo::rendering::MaterialGenerator’
  302 |     MaterialGenerator::Perm _permutation)
      |                        ^~~~
/home/theeast/Projects/gazebo-arch/gazebo/src/gazebo-classic-gazebo11_11.13.0/gazebo/rendering/deferred_shading/GBufferMaterialGenerator.cc:303:1: error: expected ‘,’ or ‘;’ before ‘{’ token
  303 | {
      | ^
make[2]: *** [gazebo/rendering/CMakeFiles/gazebo_rendering.dir/build.make:832: gazebo/rendering/CMakeFiles/gazebo_rendering.dir/deferred_shading/GBufferMaterialGenerator.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
acxz commented 1 year ago

Truly apologize for my lack of attention to this repository folks. The associated PRs have been merged and should unblock this issue. If you are still have problems, please make another issue and we can take it from there.