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adalca / patchRegistration

Patch based Discrete Registration.
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Cant find some libraries #1

Closed nazib closed 5 years ago

nazib commented 5 years ago

Hi I wanted to use this registration for my research. But some libraries mentioned in setup.m file are missing. Missing libs are :

  1. https://github.com/adalca/mgt
  2. https://github.com/adalca/mmit
  3. https://github.com/adalca/mivt Have any idea how to get them?

regards

adalca commented 5 years ago

hi @nazib, all of those were put together into https://github.com/adalca/matlib, so you only need to import this one library now instead of those three.

I've made the change in the setup.m

Thanks for your interest!

nazib commented 5 years ago

thanks a lot @adalca

nazib commented 5 years ago

Hi @adalca Thanks for your libraries. Just a simple question, do you know any python/matlab library that can extract overlapping 3D patches from MRI images?

adalca commented 5 years ago

Hi @nazib

I wrote some libraries for this in both languages.

For matlab, see patchlib, perhaps function vol2lib, it has a ton of settings including overlapping.

For python, see pytools patchlib, which has less functionality overall, but patch_gen() should work for you.

There's probably other libraries out there, but I'm familiar with these :)

nazib commented 5 years ago

Hi @adalca thanks for your information. It works. Is there any other function that combines the pathes and generate full resolution image?

adalca commented 5 years ago

Yup -- look for quilt function in either library