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adamallo / SimPhy

SimPhy: A comprehensive simulator of gene family evolution
GNU General Public License v2.0
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INDELIble_wrapper.pl Error at line 411 #3

Closed ericopolo closed 6 years ago

ericopolo commented 6 years ago

Hi! I'm trying SimPhy for the first time and following the tutorials in this GitHub page (Section 5.4 of the manual). When I get to case 2 we should use the INDELIble_wrapper.pl for generating alignments after the simulations, and I'm getting the following error:

Can't exec "indelible": No such file or directory at /home/erico/bin/INDELIble_wrapper.pl line 411.

Checking line 411 I noticed that the problem is it's calling the command "indelible" with the system function, and since I don't have any program with that name installed, the bash is returning that error to the perl interpreter. Maybe I should have something installed that I don't? I couldn't find any reference to dependencies aside from Math::GSL in the manual.

Thank you!!

leomrtns commented 6 years ago

Yes, you need to install idelible from here: http://abacus.gene.ucl.ac.uk/software/indelible/

(see more details here https://github.com/adamallo/SimPhy/wiki/Manual#54-sequence-simulation-using-indelible_wrapperpl)

ericopolo commented 6 years ago

OMG, so sorry for that! I thought the perl script was the indelible itself! My bad... Not an issue at all, except for my own lack of attention.. Thank you, leomrtns! It's working just fine now.