Choice of consensus sequences in teref.human.fa

adamewing / tldr

Identify and annotate TE-mediated insertions in long-read sequence data

MIT License

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Choice of consensus sequences in teref.human.fa #2

Closed SegoleneDiry closed 3 years ago

SegoleneDiry commented 3 years ago

Hi Adam, I'm a beginner in transposable elements analysis in human genome and I'm interested in your tool TLDR. I'm wondering how do you create the teref.human.fa file (from which database or publications)? Thank you for your help, Segolene

adamewing commented 3 years ago

Hi, there isn't really a database or publication I can point to for the te reference file, for the most part it consists of full length low-divergence examples from the reference genome (from the RepeatMasker track).

SegoleneDiry commented 3 years ago

Ok, thanks!