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adamewing / tldr

Identify and annotate TE-mediated insertions in long-read sequence data
MIT License
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Memory allocation #20

Open eyalmpeer opened 2 years ago

eyalmpeer commented 2 years ago

Using TLDR on a 100GB bam file results in TLDR exiting due to low memory despite being run on a server with 256GB RAM. For now I will split by chromosome and work on each chromosome separately and I hope that will resolve the memory issue. However, maybe in future versions the program can utilize better memory management? Thanks and thank you for this great program.

CWYuan08 commented 2 months ago

Dear @eyalmpeer @adamewing @SarahBeecroft, I am encountering the same memory issue, I am wondering if you have any suggestions/better solutions now? Thank you very much!

Best, CW