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adamjgnoel / AcCoRD

Actor-based Communication via Reaction-Diffusion. A molecular communication simulator. Simulates stochastic reaction-diffusion systems.
https://warwick.ac.uk/adamnoel/software/accord/
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Surface diffusion #56

Open adamjgnoel opened 8 years ago

adamjgnoel commented 8 years ago

Molecules that are bound to a surface will continue to diffuse with their regular diffusion coefficient as if they are not bound to surface. One workaround is to define unique molecule types to use on surfaces that have diffusion coefficient of zero. Generally, I need to decide whether to allow diffusion that is restricted to the surface face.

This issue will be somewhat mitigated by the implementation of #22.

adamjgnoel commented 7 years ago

Issue #22 was closed, which partially addresses this issue by allowing user to set a molecule's diffusion coefficient to 0 in surface regions.

Diffusion that is restricted to the boundary of a surface is still not implemented.