adamjgnoel / AcCoRD

Actor-based Communication via Reaction-Diffusion. A molecular communication simulator. Simulates stochastic reaction-diffusion systems.
https://warwick.ac.uk/adamnoel/software/accord/
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Intra-microscopic step surface interactions #98

Open adamjgnoel opened 7 years ago

adamjgnoel commented 7 years ago

Simulations of absorbing surfaces can take a very long time because typically a very small microscopic time step is needed. As identified in the AcCoRD journal paper, it would be good to consider whether we can incorporate a intra-step surface reaction probability that accounts for hitting the surface during the step, even if the molecule's trajectory did not cross the surface. Such a probability could potentially enable a dramatic efficiency in the corresponding simulation run time.