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adamjtaylor / miniature

Use dimensionality reduction to create thumnails for high-dimensional imaging
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Rotate embedding to best fit in L*ab space #16

Closed adamjtaylor closed 1 year ago

adamjtaylor commented 1 year ago

Koutrouli M, Morris JH, Jensen LJ. U-CIE [/juː ’siː/]: Color encoding of high-dimensional data. Protein Sci. 2022;31: e4388. doi:10.1002/pro.4388

https://onlinelibrary.wiley.com/doi/10.1002/pro.4388 https://u-cie.jensenlab.org/ https://www.youtube.com/watch?v=V6KgC5KJ-3g&list=LLDYCgl3AdNdKxPyQje8yD3g&index=2

adamjtaylor commented 1 year ago

U-CIE exists as an R package on CRAN. Can reoptimise for Python to apply to Miniature

Github source code: https://github.com/mikelkou/ucie

adamjtaylor commented 1 year ago

Implemented in V2 branch