Look at using rmpk or ompr for the MILP generation

adamsardar / stoneTrees

Integrating 'omics data with biological networks by solving Steiner Tree problems

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Look at using rmpk or ompr for the MILP generation #15

Open adamsardar opened 4 years ago

adamsardar commented 4 years ago

https://github.com/dirkschumacher/rmpk/blob/master/README.md

A much lighter weight library that might help abstract away the fiddly indices.

adamsardar commented 4 years ago

Also, whilst being more explicit in the model formulation another advantage would be the use of a general solver in the backend via ROI (no need to maintain the matrix mapping functions). Would instantly solve #9