More explicit options to set nThreads

adamsardar / stoneTrees

Integrating 'omics data with biological networks by solving Steiner Tree problems

Mozilla Public License 2.0

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More explicit options to set nThreads #18

Open adamsardar opened 4 years ago

adamsardar commented 4 years ago

At current there are alot of 'automatic' choices with regards to multithreading. This isn't ideal - ideally we'd allow the user to choose.

Perhaps use options("stoneTrees_nThreads")?

adamsardar commented 4 years ago

Threading is complex issue and different settings can affect performance in wildly different ways. Perhaps this is yet another reason to support #15 - delegate all these options to ROI