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adbroido / SFAnalysis

GNU General Public License v3.0
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only degree sequences #4

Open martaluc opened 2 years ago

martaluc commented 2 years ago

Hi,

I have two degree sequences whose I want to test their scale-free properties. These files have one column with the names of genes and the count column with the degree. One file includes all the genes of my PPI network and the other includes a subset of these genes. Basically I want to check if there is any differences in term of scale-free between the whole network and a subset of genes of my interest.

In the usage section, there is written that it is possible to run the code without the gml file.

Could I ask you to provide an example about using the code without the gml information?

I tried to use the 'analyze_degree_sequences' function with only the deg_dir, but the function needs two arguments.

Thank you!

ion-andreea commented 2 years ago

Hello, Same problem here. I have tried to use only degree sequence and I didn't manage to run the analysis. Can you give an example on how should we use it in this case?

Thank you!