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adelhpour / SBMLNetwork

SBMLNetwork is a library designed to enable software developers and systems biologists to interact with the graphical representation of SBML (Systems Biology Markup Language) models.
MIT License
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function 'c_api_setReactionsBorderWidth' not found #90

Closed hsauro closed 1 month ago

hsauro commented 1 month ago

The following code generates function 'c_api_setReactionsBorderWidth' not found

import tellurium as te import sbmlnetwork

model = ''' var S0, S1, S2, S3, S4 J0: S1 -> S0 + S4; E0(k0S1); J1: S3 -> S4; E1(k1S3); J2: S4 -> S3; E2(k2S4); J3: S1 + S1 -> S3; E3(k3S1S1); J4: S2 + S2 -> S0; E4(k4S2S2); J5: S0 -> S2 + S4; E5(k5S0); J6: S4 -> S1; E6(k6S4); J7: S1 + S2 -> S3; E7(k7S1S2); J8: S3 -> S1; E8(k8*S3);

k0 = 0.182433; k1 = 0.150651; k2 = 0.153518; k3 = 0.952991; k4 = 0.711677; k5 = 0.399124 k6 = 0.612890; k7 = 0.431755; k8 = 0.001688

E0 = 1; E1 = 1; E2 = 1; E3 = 1; E4 = 1; E5 = 1; E6 = 1; E7 = 1 E8 = 1

S0 = 4; S1 = 5; S2 = 6; S3 = 6; S4 = 6 '''

r = te.loada (model) sb = sbmlnetwork.load (r.getSBML()) sb.autolayout(4)

sb.setReactionsBorderWidth(9) sb.draw()

adelhpour commented 1 month ago

Fixed with PR #96 Note that if you are willing to set the color of reaction curves, you need to use 'setReactionsLineWidth(9). 'setReactionsBorderWidth' is used in cases where a geometric shape (and not a curve) representing a reaction.