currently testing aligners bwa-meth compared to biscuit on n=5 samples so we can only use biscuit aligner in nextflow workflow. Removed all commands not necessary for bisulfite-sequencing methylation reference data from genomic DNA from tissues.
Let's create the nextflow pipeline from these commands.
I don't think I really need the "renaming" steps, is there a way to rename properly within the sortbam and filterbam steps?
currently testing aligners bwa-meth compared to biscuit on n=5 samples so we can only use biscuit aligner in nextflow workflow. Removed all commands not necessary for bisulfite-sequencing methylation reference data from genomic DNA from tissues.
Let's create the nextflow pipeline from these commands.
I don't think I really need the "renaming" steps, is there a way to rename properly within the sortbam and filterbam steps?