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adeslatt / methylSeqCaptureSeq

Megan Barefoot's PhD thesis project
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tools used in this pipeline #3

Open meb326 opened 4 years ago

meb326 commented 4 years ago

samtools version 1.9 trim_galore version 0.6.4_dev (dependency fastqc and cudadapt v. 2.8) biscuit version 0.3.8.20180515 bamtools version 2.5.1 picard version 2.18.15-snapshot wgbs_tools = github repository (dependencies python3, c++ boost library, samtools) https://github.com/nloyfer/wgbs_tools

meb326 commented 4 years ago

tools in language nextflow: samtools https://github.com/search?q=samtools+language%3ANextflow&type=Code trim_galore https://github.com/search?q=trimgalore+language%3ANextflow&type=Code picard https://github.com/search?q=picard+language%3ANextflow&type=Code bamtools https://github.com/search?q=bamtools+language%3ANextflow&type=Code

meb326 commented 4 years ago

tools with docker images Biscuit https://hub.docker.com/r/mgibio/biscuit