Open meb326 opened 4 years ago
[ ] for each command in bash script, make into a Nextflow process and test with test data (https://github.com/nf-core/test-datasets/tree/methylseq/testdata)
[ ] piggy back from tools with code already written in Nextflow
[ ] create new code in nextflow for biscuit and wgbs_tools
[ ] create a new docker file and build image for wgbs_tools
[ ] create Flowcraft components for each Nextflow process
[ ] build a pipeline with Flowcraft
[ ] run Nextflow pipeline on CloudOS (lifebit)
[ ] for each command in bash script, make into a Nextflow process and test with test data (https://github.com/nf-core/test-datasets/tree/methylseq/testdata)
[ ] piggy back from tools with code already written in Nextflow
[ ] create new code in nextflow for biscuit and wgbs_tools
[ ] create a new docker file and build image for wgbs_tools
[ ] create Flowcraft components for each Nextflow process
[ ] build a pipeline with Flowcraft
[ ] run Nextflow pipeline on CloudOS (lifebit)