Best practice ?when importing into a docker a set of files from another repository (wgbs_tools e.g.)

adeslatt / methylSeqCaptureSeq

Megan Barefoot's PhD thesis project

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Best practice ?when importing into a docker a set of files from another repository (wgbs_tools e.g.) #7

Closed adeslatt closed 4 years ago

adeslatt commented 4 years ago

What is the best practice when we need to containerize another repository?

Such as wgbs_tools

meb326 commented 4 years ago

might be a little basic but: https://docs.docker.com/develop/develop-images/dockerfile_best-practices/

Maybe this is helpful? https://drupalize.me/tutorial/dockerize-existing-project?p=3040

adeslatt commented 4 years ago

Ok -- realized that this is completely a bad idea! what one needs to do is containerize each of the dependencies and then use that docker in the workflow. I forked the wgbs_tools and built a container - after we have tested I will ask Netaniel for a pull request.