issues with non IUPAC bases

adigenova / wengan

An accurate and ultra-fast hybrid genome assembler

GNU Affero General Public License v3.0

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issues with non IUPAC bases #70

Closed gargkritika closed 1 year ago

gargkritika commented 2 years ago

Hi Alex,

Thank you for the wonderful program. I am getting the non-IUPAC base error for liger. Based on your previous comments, I installed the seqtk, based on your fork. However, I cannot find the option 'iupac2basesA'

Please suggest a solution for this error.

Thank you Best regards Kritika

adigenova commented 2 years ago

Hi Kritika, The required step for fixing your issue are:

git clone https://github.com/adigenova/seqtk.git
cd seqtk
make

then you will have the function iupac2basesA

Best Alex