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adigherman / Rxnat

retrieve neuro images from various public/private datasets
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NITRC not connecting #10

Open muschellij2 opened 4 years ago

muschellij2 commented 4 years ago 
library(Rxnat)
nitrc <- xnat_connect('https://nitrc.org/ir', xnat_name='NITRC')
#> NITRC_RXNAT_USER is being used for user
#> NITRC_RXNAT_PASS is being used for password
#> Error in xnat_connect("https://nitrc.org/ir", xnat_name = "NITRC"): XNAT call failed, message: Unauthorized

Created on 2020-10-15 by the reprex package (v0.3.0.9001)

Session info sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.0.2 (2020-06-22) #> os macOS Catalina 10.15.6 #> system x86_64, darwin17.0 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz America/New_York #> date 2020-10-15 #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date lib source #> assertthat 0.2.1 2019-03-21 [2] CRAN (R 4.0.0) #> backports 1.1.10 2020-09-15 [1] CRAN (R 4.0.2) #> bitops 1.0-6 2013-08-17 [2] CRAN (R 4.0.0) #> cli 2.0.2 2020-02-28 [2] CRAN (R 4.0.0) #> crayon 1.3.4 2017-09-16 [2] CRAN (R 4.0.0) #> digest 0.6.25 2020-02-23 [2] CRAN (R 4.0.0) #> ellipsis 0.3.1 2020-05-15 [2] CRAN (R 4.0.0) #> evaluate 0.14 2019-05-28 [2] CRAN (R 4.0.0) #> fansi 0.4.1 2020-01-08 [2] CRAN (R 4.0.0) #> fs 1.5.0 2020-07-31 [2] CRAN (R 4.0.2) #> glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2) #> highr 0.8 2019-03-20 [2] CRAN (R 4.0.0) #> htmltools 0.5.0 2020-06-16 [2] CRAN (R 4.0.0) #> httr 1.4.2 2020-07-20 [2] CRAN (R 4.0.2) #> knitr 1.30 2020-09-22 [1] CRAN (R 4.0.2) #> lifecycle 0.2.0 2020-03-06 [2] CRAN (R 4.0.0) #> magrittr 1.5 2014-11-22 [2] CRAN (R 4.0.0) #> pillar 1.4.6 2020-07-10 [2] CRAN (R 4.0.2) #> pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.0.0) #> purrr 0.3.4 2020-04-17 [2] CRAN (R 4.0.0) #> R6 2.4.1 2019-11-12 [2] CRAN (R 4.0.0) #> RCurl 1.98-1.2 2020-04-18 [2] CRAN (R 4.0.0) #> reprex 0.3.0.9001 2020-09-30 [1] Github (tidyverse/reprex@d3fc4b8) #> rlang 0.4.7.9000 2020-10-05 [1] Github (r-lib/rlang@0bce15a) #> rmarkdown 2.4 2020-09-30 [1] CRAN (R 4.0.2) #> rstudioapi 0.11 2020-02-07 [2] CRAN (R 4.0.0) #> Rxnat * 1.0.14 2020-10-15 [1] Github (adigherman/Rxnat@14a60c1) #> sessioninfo 1.1.1 2018-11-05 [2] CRAN (R 4.0.0) #> stringi 1.5.3 2020-09-09 [1] CRAN (R 4.0.2) #> stringr 1.4.0 2019-02-10 [2] CRAN (R 4.0.0) #> styler 1.3.2 2020-02-23 [2] CRAN (R 4.0.0) #> tibble 3.0.3 2020-07-10 [2] CRAN (R 4.0.2) #> vctrs 0.3.4 2020-08-29 [1] CRAN (R 4.0.2) #> withr 2.3.0 2020-09-22 [1] CRAN (R 4.0.2) #> xfun 0.18 2020-09-29 [1] CRAN (R 4.0.2) #> yaml 2.2.1 2020-02-01 [2] CRAN (R 4.0.0) #> #> [1] /Users/johnmuschelli/Library/R/4.0/library #> [2] /Library/Frameworks/R.framework/Versions/4.0/Resources/library
muschellij2 commented 4 years ago

Also, if we get an unauthorized, we could default to username = NULL, such as:

library(Rxnat)
nitrc <- xnat_connect('https://nitrc.org/ir', xnat_name='BLAH')

Created on 2020-10-15 by the reprex package (v0.3.0.9001)

Session info sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.0.2 (2020-06-22) #> os macOS Catalina 10.15.6 #> system x86_64, darwin17.0 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz America/New_York #> date 2020-10-15 #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date lib source #> assertthat 0.2.1 2019-03-21 [2] CRAN (R 4.0.0) #> backports 1.1.10 2020-09-15 [1] CRAN (R 4.0.2) #> bitops 1.0-6 2013-08-17 [2] CRAN (R 4.0.0) #> cli 2.0.2 2020-02-28 [2] CRAN (R 4.0.0) #> crayon 1.3.4 2017-09-16 [2] CRAN (R 4.0.0) #> digest 0.6.25 2020-02-23 [2] CRAN (R 4.0.0) #> ellipsis 0.3.1 2020-05-15 [2] CRAN (R 4.0.0) #> evaluate 0.14 2019-05-28 [2] CRAN (R 4.0.0) #> fansi 0.4.1 2020-01-08 [2] CRAN (R 4.0.0) #> fs 1.5.0 2020-07-31 [2] CRAN (R 4.0.2) #> glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2) #> highr 0.8 2019-03-20 [2] CRAN (R 4.0.0) #> htmltools 0.5.0 2020-06-16 [2] CRAN (R 4.0.0) #> httr 1.4.2 2020-07-20 [2] CRAN (R 4.0.2) #> knitr 1.30 2020-09-22 [1] CRAN (R 4.0.2) #> lifecycle 0.2.0 2020-03-06 [2] CRAN (R 4.0.0) #> magrittr 1.5 2014-11-22 [2] CRAN (R 4.0.0) #> pillar 1.4.6 2020-07-10 [2] CRAN (R 4.0.2) #> pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.0.0) #> purrr 0.3.4 2020-04-17 [2] CRAN (R 4.0.0) #> R6 2.4.1 2019-11-12 [2] CRAN (R 4.0.0) #> RCurl 1.98-1.2 2020-04-18 [2] CRAN (R 4.0.0) #> reprex 0.3.0.9001 2020-09-30 [1] Github (tidyverse/reprex@d3fc4b8) #> rlang 0.4.7.9000 2020-10-05 [1] Github (r-lib/rlang@0bce15a) #> rmarkdown 2.4 2020-09-30 [1] CRAN (R 4.0.2) #> rstudioapi 0.11 2020-02-07 [2] CRAN (R 4.0.0) #> Rxnat * 1.0.14 2020-10-15 [1] Github (adigherman/Rxnat@14a60c1) #> sessioninfo 1.1.1 2018-11-05 [2] CRAN (R 4.0.0) #> stringi 1.5.3 2020-09-09 [1] CRAN (R 4.0.2) #> stringr 1.4.0 2019-02-10 [2] CRAN (R 4.0.0) #> styler 1.3.2 2020-02-23 [2] CRAN (R 4.0.0) #> tibble 3.0.3 2020-07-10 [2] CRAN (R 4.0.2) #> vctrs 0.3.4 2020-08-29 [1] CRAN (R 4.0.2) #> withr 2.3.0 2020-09-22 [1] CRAN (R 4.0.2) #> xfun 0.18 2020-09-29 [1] CRAN (R 4.0.2) #> yaml 2.2.1 2020-02-01 [2] CRAN (R 4.0.0) #> #> [1] /Users/johnmuschelli/Library/R/4.0/library #> [2] /Library/Frameworks/R.framework/Versions/4.0/Resources/library