When I simulate genotypes based on my input vcf and export the genotype matrix with retrieveGenotypes(ids), is there
any possibility to map the original snp IDs (from the vcf file) to ones in the created genotype matrix?
I'm asking, because the IDs in the retrieveGenotype(ids) columns are named differently then in my vcf file (rs).
Hey Apostolos,
It's me again. I'm having a short question:
When I simulate genotypes based on my input vcf and export the genotype matrix with retrieveGenotypes(ids), is there any possibility to map the original snp IDs (from the vcf file) to ones in the created genotype matrix? I'm asking, because the IDs in the retrieveGenotype(ids) columns are named differently then in my vcf file (rs).
Best regards Thomas