Ids of simulated SNPs - Githubissues

adimitromanolakis / sim1000G

Simulation of rare and common variants based on 1000 genomes data

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Ids of simulated SNPs #9

Open TeaByrd opened 3 years ago

TeaByrd commented 3 years ago

Hey Apostolos,

It's me again. I'm having a short question:

When I simulate genotypes based on my input vcf and export the genotype matrix with retrieveGenotypes(ids), is there any possibility to map the original snp IDs (from the vcf file) to ones in the created genotype matrix? I'm asking, because the IDs in the retrieveGenotype(ids) columns are named differently then in my vcf file (rs).

Best regards Thomas

BideZ commented 1 year ago

I am facing the same issue now. Does anyone know how it can be done?