DeprecationWarning: Deprecated. Use model.wv.save_word2vec_format instead.

[yuedeji]

I met this error when I tried to run the karate sample graph. I searched online and the reason is that gensim updates their word2vec model as shown here https://groups.google.com/forum/#!topic/gensim/pjZo1ZunIZA Could you help to solve this issue?

Details: python src/main.py --input graph/karate.edgelist Walk iteration: 1 / 10 2 / 10 3 / 10 4 / 10 5 / 10 6 / 10 7 / 10 8 / 10 9 / 10 10 / 10 Traceback (most recent call last): File "src/main.py", line 104, in main(args) File "src/main.py", line 100, in main learn_embeddings(walks) File "src/main.py", line 88, in learn_embeddings model.save_word2vec_format(args.output) File "/usr/local/lib/python2.7/dist-packages/gensim/models/word2vec.py", line 1438, in save_word2vec_format raise DeprecationWarning("Deprecated. Use model.wv.save_word2vec_format instead.") DeprecationWarning: Deprecated. Use model.wv.save_word2vec_format instead.

[carodak]

Got the same error here. Did you fix it ?

[yuedeji]

No, I didn't. We can either try to use an older version of word2vec or change the source code of using word2vec. While, I am counting on the authors to fix this. If you get any lucky, please let me know.

[carodak]

Hello,

I found the solution here : https://github.com/aditya-grover/node2vec/issues/11

So he said : "line 88 in main.py should be changed to model.wv.save_word2vec_format"

Best reguards

[WillzZhu]

This change can make the code run. But the format of the embedding file is broken, which cannot be loaded again. Is there any solution to this problem?

[carodak]

I am not sure that I get it. Do you mean that this change broke your input (adjacences matrixes) ? It doesn't do that to me. I can properly load again and again my matrixes. I made some change not loading adjacences from files but from my numpy graphs. Anyway, it was working when I did it with adjacences list. I could load the same adjacences list 2 times or more.

Le jeudi 2 novembre 2017, HZ notifications@github.com a écrit :

This change can make the code run. But the format of the embedding file is broken, which cannot be loaded again.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/aditya-grover/node2vec/issues/18#issuecomment-341538151, or mute the thread https://github.com/notifications/unsubscribe-auth/AYHIm5X1c63mikw2kQpPEkXoK1e_WxU-ks5syh0pgaJpZM4NubXp .

[carodak]

Sorry I mean that the input is adjacency list. And I can properly load them again and again

Le lundi 6 novembre 2017, Caro Dak carodak2@gmail.com a écrit :

I am not sure that I get it. Do you mean that this change broke your input (adjacences matrixes) ? It doesn't do that to me. I can properly load again and again my matrixes. I made some change not loading adjacences from files but from my numpy graphs. Anyway, it was working when I did it with adjacences list. I could load the same adjacences list 2 times or more.

Le jeudi 2 novembre 2017, HZ <notifications@github.com javascript:_e(%7B%7D,'cvml','notifications@github.com');> a écrit :

This change can make the code run. But the format of the embedding file is broken, which cannot be loaded again.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/aditya-grover/node2vec/issues/18#issuecomment-341538151, or mute the thread https://github.com/notifications/unsubscribe-auth/AYHIm5X1c63mikw2kQpPEkXoK1e_WxU-ks5syh0pgaJpZM4NubXp .

[WillzZhu]

Oh the adjacency list (input) is fine, but my embedding matrix (output file) is broken, with wrong dimension (output [14, 128] while it should be [34, 128] in author's experiment), mixed with '[' and ']' symbols :(

I'm sure the parser arguments are all correct.

[carodak]

I don't know what to say. I did not have such problems (I was using python 3, I made some change to make it work with python 3). The problem is that I didn't take a look at my code since 3 months and I do not have a computer with everything installed in atm. It's a bit messy, ahah. I can just suggest to take a look at my code even if it's node2vec applied for something else you may find something usefull.

2017-11-07 4:51 GMT+01:00 HZ notifications@github.com:

Oh the adjacency list (input) is fine, but my embedding matrix (output) is broken, with wrong dimension (output 14128 while it should be 34128 in author's experiment), mixed with '[' and ']' symbols :(

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/aditya-grover/node2vec/issues/18#issuecomment-342367847, or mute the thread https://github.com/notifications/unsubscribe-auth/AYHIm7CMxy15NEo2TgH-8eND7AaiktT3ks5sz9OzgaJpZM4NubXp .

[alavertu]

Make sure you're using the correct python package versions. I'm using the python 2.7 and the package versions specified in the requirements.txt file, not having any issues.

[urmisaha]

Same for me. I used the exact versions specified in the requirements.txt file and the code ran successfully. I ran the following: pip install networkx==1.11 numpy==1.11.2 gensim==0.13.3 And then ran this: python src/main.py --input graph/karate.edgelist --output emb/karate.emd Code ran successfully. :)

[king-zkai]

I'm using the python 2.7 and the package versions specified in the requirements.txt file, but the modules cannot be installed. How can I install the required modules correctly? Thank you very much！

[amitmishramtech]

I am not getting any output graph just getting only 👍 Walk iteration: 1 / 10 2 / 10 3 / 10 4 / 10 5 / 10 6 / 10 7 / 10 8 / 10 9 / 10 10 / 10